Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30888
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 50 2e-07
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 2.6
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 26 3.4
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 26 3.4
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 26 3.4
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 3.4
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 5.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 5.9
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 7.8
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 25 7.8
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 25 7.8
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 25 7.8
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 49.6 bits (113), Expect = 2e-07
Identities = 20/70 (28%), Positives = 41/70 (58%)
Frame = +3
Query: 45 VELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTS 224
+ L+ P+ G + ++++ ++P P A+ Q E+Q++ Y+ LY SPY T Q+T
Sbjct: 96 IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLTTLYLDSPYTTDLQRTR 155
Query: 225 VILNTKTVES 254
+IL + +++
Sbjct: 156 LILPSAKIDT 165
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 251 IITKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKN 361
++ K+ F + + + PYAN+ F E +++H N
Sbjct: 460 VLPKLAEFRN-NNFVRFSPYANITSFRENMINVHLSN 495
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 3.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 407 VSHWGNIAIEEVIEIEHT 460
V+H GN++++E+IE+ T
Sbjct: 98 VAHSGNVSLDEIIEVART 115
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 185 IQIANIFHKLVFLLSYSCRIW 123
+ IA +F L+F +S+ C IW
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 3.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 407 VSHWGNIAIEEVIEIEHT 460
V+H GN++++E+IE+ T
Sbjct: 98 VAHSGNVSLDEIIEVART 115
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 287 GTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEI 451
G I GP N+ T ++L + K+N R +R+I +S G+I+ EE++++
Sbjct: 173 GRTILGPKENIESLTREDLLQYIKDN------YRSDRMI-ISSAGSISHEELVKL 220
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 89 CCRNCVHQSFTTISDS 136
CCRNCV +S T +S
Sbjct: 483 CCRNCVERSTTWFIES 498
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 5.9
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 355 VVNAELLFSERPNIS-VRSINN--CSINL*ERLHLGNDSTVFVFRITLVFCVEV*YGEYV 185
V N +L S+R + S ++S+ + CSI+ E +L N + + + L E+ Y EY+
Sbjct: 464 VKNENILLSQRNDKSFLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYYEYL 523
Query: 184 YK 179
+
Sbjct: 524 VR 525
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/43 (27%), Positives = 16/43 (37%)
Frame = +2
Query: 44 CGAQGTPKRRCHSKCCCRNCVHQSFTTISDSYNSARRPVCEIC 172
CG G R C C NC +Q+ S+ + C C
Sbjct: 22 CGENGHQARECTKGSICYNC-NQTGHKASECTEPQQEKTCYAC 63
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 45 VELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYT-YSPYYTS 209
V+L+ L V + +FT ++P I + D+ ++ NL+T +S ++ S
Sbjct: 8 VDLERGLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDS 63
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 323 PFTEKELSIHYKNNSPFLTVTRVERLIE-VS-HWGNIAIEEVIEIEHTGAK 469
PF+EK S+ +SP L V ++ +S GN+ E+ ++ GA+
Sbjct: 100 PFSEKNQSVKIPPHSPTLPVQNASAFVKPISVPLGNVKEEKFLDTNPIGAE 150
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 45 VELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYT-YSPYYTS 209
V+L+ L V + +FT ++P I + D+ ++ NL+T +S ++ S
Sbjct: 28 VDLERGLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDS 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,671
Number of Sequences: 5004
Number of extensions: 46050
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -