Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30888
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    75   2e-14
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049...    28   3.4  
05_07_0074 - 27509124-27509199,27509613-27512143                       28   4.5  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/74 (44%), Positives = 44/74 (59%)
 Frame = +2

Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
           TK       +  + YGPY ++ PF+   + +HY+NN+PF     V R IE+SHWGN+ I 
Sbjct: 186 TKYPNTKLAESELKYGPYEDLPPFSYSPMVVHYENNNPFAVAKEVIREIEISHWGNVQIT 245

Query: 437 EVIEIEHTGAKLKG 478
           E   I H GAKLKG
Sbjct: 246 EHYNIAHGGAKLKG 259



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 30/73 (41%), Positives = 40/73 (54%)
 Frame = +3

Query: 36  FWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQ 215
           F+   L +PL  G T+++ V TVFT ++QP+P  ITQ E Q V Y  +    SPY    Q
Sbjct: 112 FFSASLSKPLEKGKTLHLDVLTVFTHSVQPFPEEITQAESQLVVYQDSAQYLSPYPVKVQ 171

Query: 216 KTSVILNTKTVES 254
             S+ L    VES
Sbjct: 172 TLSIRLPGGRVES 184


>10_08_0819 -
           20803992-20804493,20804578-20804759,20804849-20804911,
           20805736-20805846,20806668-20806721,20807040-20807075,
           20807356-20807400,20807473-20807562,20807863-20808195
          Length = 471

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 124 GCKALVNTVSTTTFTVAPAFRGSLSSTRQNLT*S*PFT 11
           GC AL+   S T+F      RG++S  R + +   PFT
Sbjct: 364 GCHALIRRTSNTSFARDQICRGNVSGLRMSKSAIIPFT 401


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 100 VSTTTFTVAPAFRGSLSSTRQNLT 29
           ++ ++ T+AP FRGSLS  + N T
Sbjct: 405 IAASSNTIAPYFRGSLSGLKYNYT 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,232
Number of Sequences: 37544
Number of extensions: 264224
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)