Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30888
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_28225| Best HMM Match : YL1 (HMM E-Value=2.1) 29 2.6
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 27 8.0
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_30509| Best HMM Match : TSP_1 (HMM E-Value=0.00019) 27 8.0
>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 54.8 bits (126), Expect = 3e-08
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +3
Query: 66 NAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKT 245
++G +V+V VE VF A++P+P + Q + V + GN YT++ Y + Q T++ L++
Sbjct: 83 SSGGSVDVSVEEVFAHAMKPFPAKVAQSDKHQVLFTGNHYTFAVYKSKQQSTTITLSSSN 142
Query: 246 VES 254
+ES
Sbjct: 143 IES 145
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFL 376
TK+KP SQ D TI GPY++V F + L +H++NNSPF+
Sbjct: 147 TKLKPSSQSDNTITLGPYSDVDAFKQSTLKVHFENNSPFM 186
>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 LSKKTSL*NMLAICIHTPRTIP-PHKKPV*F*IQRLLNHYQGEAFLTS*WN 291
+S+ S+ N I H P + K+P+ +Q LL ++G A + WN
Sbjct: 497 MSRHNSMHNRFGIVCHQPNFVKLAQKEPIKAEVQSLLESFKGVALAVNAWN 547
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 478 TFELGSCMLNFNYLFNGNITPM*YFYQSFDASN 380
T L +C LN Y +T YFY S D SN
Sbjct: 820 TVNLYTCFLNNYYASTRTVTASTYFYPSLDRSN 852
>SB_28225| Best HMM Match : YL1 (HMM E-Value=2.1)
Length = 331
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 478 TFELGSCMLNFNYLFNGNITPM*YFYQSFDASN 380
T L +C LN Y +T +FY S D SN
Sbjct: 217 TVNLYTCFLNMYYASTRTVTASTFFYPSLDRSN 249
>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 8 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 169
HC C +C G + C +KC C+N CV++ FT I S +N +CE
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160
Query: 170 CW 175
W
Sbjct: 161 IW 162
>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 8 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 169
HC C +C G + C +KC C+N CV++ FT I S +N +CE
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160
Query: 170 CW 175
W
Sbjct: 161 IW 162
>SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 199 YGEYVYKLPTYFTNWSSC 146
YGE++ LPTY+T S+C
Sbjct: 225 YGEHMQPLPTYYTMESTC 242
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +2
Query: 74 CHSKCCCRNCVHQSFTTISDSYNSARRPVCEICWQFVYILPVLYLHTKNQCNSKYKDC*I 253
C CCC+NC ++S SD + + E+ Q + + + T+N+ ++
Sbjct: 311 CTQGCCCKNCSNKS--NSSDDIHHEKSSKTELKNQDLPLFNFNPIRTQNRKCYSSEESNQ 368
Query: 254 ITKVKPFSQVDGTIIYG 304
++PFS V+ + + G
Sbjct: 369 DEPMEPFSCVEASRLRG 385
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 166 FTNWSSC*VIAVGYGCKALVNTVSTTTFTVAPAFR 62
FTN+S V GC+ V T S TT T AP F+
Sbjct: 1050 FTNYSFTVVACNSGGCRRSVPT-SITTLTTAPDFQ 1083
>SB_30509| Best HMM Match : TSP_1 (HMM E-Value=0.00019)
Length = 448
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 133 VGYGCKALVNTVSTTTFTVAPAFRGSLSST 44
+ YG + LVN+V T P+ +GS +ST
Sbjct: 415 LAYGQQDLVNSVFDVQVTAGPSIKGSSAST 444
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,802
Number of Sequences: 59808
Number of extensions: 340351
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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