Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30888
(479 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 89 1e-17
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 89 1e-17
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 89 1e-17
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 89 1e-17
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 89 1e-17
BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein. 30 4.8
AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein. 30 4.8
AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM pro... 30 4.8
AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM pro... 30 4.8
AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein pr... 30 4.8
AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens ... 30 4.8
AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM pro... 30 4.8
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 88.6 bits (210), Expect = 1e-17
Identities = 36/74 (48%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
TK+ ++ + + YGP+ +V +++ +HY+NNSPFLT+T + R+IEVSHWGNIA+E
Sbjct: 186 TKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVE 245
Query: 437 EVIEIEHTGAKLKG 478
E ++++HTGA LKG
Sbjct: 246 ENVDLKHTGAVLKG 259
Score = 83.4 bits (197), Expect = 4e-16
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 3 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNL 182
ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + GN
Sbjct: 102 ETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNH 160
Query: 183 YTYSPYYTSTQKTSVILNTKTVES 254
Y YSPY T TQ V L ++ VES
Sbjct: 161 YFYSPYPTKTQTMRVKLASRNVES 184
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 88.6 bits (210), Expect = 1e-17
Identities = 36/74 (48%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
TK+ ++ + + YGP+ +V +++ +HY+NNSPFLT+T + R+IEVSHWGNIA+E
Sbjct: 186 TKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVE 245
Query: 437 EVIEIEHTGAKLKG 478
E ++++HTGA LKG
Sbjct: 246 ENVDLKHTGAVLKG 259
Score = 83.4 bits (197), Expect = 4e-16
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 3 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNL 182
ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + GN
Sbjct: 102 ETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNH 160
Query: 183 YTYSPYYTSTQKTSVILNTKTVES 254
Y YSPY T TQ V L ++ VES
Sbjct: 161 YFYSPYPTKTQTMRVKLASRNVES 184
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 88.6 bits (210), Expect = 1e-17
Identities = 36/74 (48%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
TK+ ++ + + YGP+ +V +++ +HY+NNSPFLT+T + R+IEVSHWGNIA+E
Sbjct: 186 TKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVE 245
Query: 437 EVIEIEHTGAKLKG 478
E ++++HTGA LKG
Sbjct: 246 ENVDLKHTGAVLKG 259
Score = 83.4 bits (197), Expect = 4e-16
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 3 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNL 182
ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + GN
Sbjct: 102 ETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNH 160
Query: 183 YTYSPYYTSTQKTSVILNTKTVES 254
Y YSPY T TQ V L ++ VES
Sbjct: 161 YFYSPYPTKTQTMRVKLASRNVES 184
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 88.6 bits (210), Expect = 1e-17
Identities = 36/74 (48%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
TK+ ++ + + YGP+ +V +++ +HY+NNSPFLT+T + R+IEVSHWGNIA+E
Sbjct: 147 TKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVE 206
Query: 437 EVIEIEHTGAKLKG 478
E ++++HTGA LKG
Sbjct: 207 ENVDLKHTGAVLKG 220
Score = 83.4 bits (197), Expect = 4e-16
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 3 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNL 182
ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + GN
Sbjct: 63 ETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNH 121
Query: 183 YTYSPYYTSTQKTSVILNTKTVES 254
Y YSPY T TQ V L ++ VES
Sbjct: 122 YFYSPYPTKTQTMRVKLASRNVES 145
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 88.6 bits (210), Expect = 1e-17
Identities = 36/74 (48%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
TK+ ++ + + YGP+ +V +++ +HY+NNSPFLT+T + R+IEVSHWGNIA+E
Sbjct: 186 TKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVE 245
Query: 437 EVIEIEHTGAKLKG 478
E ++++HTGA LKG
Sbjct: 246 ENVDLKHTGAVLKG 259
Score = 81.4 bits (192), Expect = 1e-15
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +3
Query: 3 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNL 182
ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + GN
Sbjct: 102 ETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNH 160
Query: 183 YTYSPYYTSTQKTSVILNTKTVES 254
Y Y PY T TQ V L ++ VES
Sbjct: 161 YFYPPYPTKTQTMRVKLASRNVES 184
>BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein.
Length = 373
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein.
Length = 373
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 373
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 276
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein
protein.
Length = 200
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 28 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 64
>AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ14538 fis, clone NT2RM2001324, weakly similar to
ZYXIN. ).
Length = 276
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM
protein-1 protein.
Length = 374
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 178
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,734,097
Number of Sequences: 237096
Number of extensions: 1554245
Number of successful extensions: 7668
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7639
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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