Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30888
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p pro...   101   7e-22
BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p pro...   101   7e-22
AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-P...   101   7e-22
BT022188-1|AAY51582.1|  387|Drosophila melanogaster IP01201p pro...    30   1.4  
AE013599-935|AAF58895.1|  387|Drosophila melanogaster CG1663-PA ...    30   1.4  
X51968-1|CAA36226.1|  471|Drosophila melanogaster protein ( Dros...    29   3.3  

>BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p
           protein.
          Length = 464

 Score =  101 bits (241), Expect = 7e-22
 Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
 Frame = +2

Query: 176 QFVYILPVLYLHTKNQCNS-----KYKDC*II--TKVKPFSQVDGTIIYGPYANVGPFTE 334
           QFV     L+L++K + NS     K     I+  T+VKPFS     I  GPY NV  F++
Sbjct: 146 QFVKYTGNLHLYSKYRTNSQKTNVKLSSSNILSHTQVKPFSVSSNKITLGPYENVEAFSQ 205

Query: 335 KELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 478
           + L IHY+N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG
Sbjct: 206 EPLVIHYENSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKG 253



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = +3

Query: 69  AGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTV 248
           A A    +VETV +K ++P+P  I Q + QFVKY GNL+ YS Y T++QKT+V L++  +
Sbjct: 117 AAAKQTFIVETVASKGIRPHPEEIRQNDKQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNI 176

Query: 249 ES 254
            S
Sbjct: 177 LS 178


>BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p
           protein.
          Length = 371

 Score =  101 bits (241), Expect = 7e-22
 Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
 Frame = +2

Query: 176 QFVYILPVLYLHTKNQCNS-----KYKDC*II--TKVKPFSQVDGTIIYGPYANVGPFTE 334
           QFV     L+L++K + NS     K     I+  T+VKPFS     I  GPY NV  F++
Sbjct: 53  QFVKYTGNLHLYSKYRTNSQKTNVKLSSSNILSHTQVKPFSVSSNKITLGPYENVEAFSQ 112

Query: 335 KELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 478
           + L IHY+N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG
Sbjct: 113 EPLVIHYENSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKG 160



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = +3

Query: 69  AGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTV 248
           A A    +VETV +K ++P+P  I Q + QFVKY GNL+ YS Y T++QKT+V L++  +
Sbjct: 24  AAAKQTFIVETVASKGIRPHPEEIRQNDKQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNI 83

Query: 249 ES 254
            S
Sbjct: 84  LS 85


>AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-PA
           protein.
          Length = 458

 Score =  101 bits (241), Expect = 7e-22
 Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
 Frame = +2

Query: 176 QFVYILPVLYLHTKNQCNS-----KYKDC*II--TKVKPFSQVDGTIIYGPYANVGPFTE 334
           QFV     L+L++K + NS     K     I+  T+VKPFS     I  GPY NV  F++
Sbjct: 140 QFVKYTGNLHLYSKYRTNSQKTNVKLSSSNILSHTQVKPFSVSSNKITLGPYENVEAFSQ 199

Query: 335 KELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 478
           + L IHY+N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG
Sbjct: 200 EPLVIHYENSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKG 247



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = +3

Query: 69  AGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTV 248
           A A    +VETV +K ++P+P  I Q + QFVKY GNL+ YS Y T++QKT+V L++  +
Sbjct: 111 AAAKQTFIVETVASKGIRPHPEEIRQNDKQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNI 170

Query: 249 ES 254
            S
Sbjct: 171 LS 172


>BT022188-1|AAY51582.1|  387|Drosophila melanogaster IP01201p
           protein.
          Length = 387

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
 Frame = +2

Query: 68  RRCHS--KCCCRNCVHQ--SFTTISDSY------NSARRPVCEICWQFVYILPVLYLH 211
           RR H   K CC +C  Q    +T+          NSAR+  C+ CW+    L +L LH
Sbjct: 304 RRTHDQPKLCCPHCSRQFRENSTLKSHIRKIHDGNSARQVSCDFCWRRFKTLELLKLH 361


>AE013599-935|AAF58895.1|  387|Drosophila melanogaster CG1663-PA
           protein.
          Length = 387

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
 Frame = +2

Query: 68  RRCHS--KCCCRNCVHQ--SFTTISDSY------NSARRPVCEICWQFVYILPVLYLH 211
           RR H   K CC +C  Q    +T+          NSAR+  C+ CW+    L +L LH
Sbjct: 304 RRTHDQPKLCCPHCSRQFRENSTLKSHIRKIHDGNSARQVSCDFCWRRFKTLELLKLH 361


>X51968-1|CAA36226.1|  471|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type I retrotransposable
           element  R1Dm.  ).
          Length = 471

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  CGAQGTPKRRCHSKCCCRNCVHQ 112
           CG QG    +C +   CRNC H+
Sbjct: 422 CGQQGHTAAKCQNPVDCRNCRHR 444


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,691,705
Number of Sequences: 53049
Number of extensions: 485750
Number of successful extensions: 1244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)