Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30888
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 96 1e-20
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 31 0.57
U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical pr... 30 1.00
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 30 1.00
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 30 1.00
AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical... 30 1.00
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 28 4.0
AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine re... 28 4.0
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 5.3
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 5.3
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 5.3
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 5.3
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 5.3
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 5.3
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 27 7.0
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 27 7.0
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 27 7.0
AF077546-7|AAC26319.1| 534|Caenorhabditis elegans Hypothetical ... 27 9.3
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2
Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
T V P Q +IYGPY N+ F K + +HY+NNSPF+ T VER IEVSHWGNIA+E
Sbjct: 168 TTVSPSKQETERVIYGPYVNIPAFETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVE 227
Query: 437 EVIEIEHTGAKLKG 478
E IE+ H GA+L G
Sbjct: 228 EYIELVHKGAELDG 241
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 39 WRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQK 218
+ V+L+ P+ GA V + + T+ L+P P+ I Q + QFV + Y S Y T TQK
Sbjct: 94 YEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVLHTSAYVPSLYETVTQK 153
Query: 219 TSV 227
T++
Sbjct: 154 TTI 156
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 30.7 bits (66), Expect = 0.57
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +2
Query: 59 TPKRRCHSKCCCRNCVHQSFTTISDSYNSARRPVCEICWQFVYILPVLYLHTKNQCNSK 235
TP R +CC R+ S S S NS PVC Q P+ NQCN +
Sbjct: 25 TPVSRVRRQCCGRS---SSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQQQCSNQCNQQ 80
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 71 RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 163
RC SK C NC + F + D+ S R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139
>U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical
protein F11D5.1b protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 186 TYSPYYTSTQKTSVILNTKTVE 251
TYSP YTST SV L++K VE
Sbjct: 53 TYSPSYTSTSLNSVSLSSKYVE 74
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 186 TYSPYYTSTQKTSVILNTKTVE 251
TYSP YTST SV L++K VE
Sbjct: 491 TYSPSYTSTSLNSVSLSSKYVE 512
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 186 TYSPYYTSTQKTSVILNTKTVE 251
TYSP YTST SV L++K VE
Sbjct: 534 TYSPSYTSTSLNSVSLSSKYVE 555
>AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical
protein C35E7.3 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 406 FYQSFDASNSQKW*IVFVVNAELLFSERPNISVRSI 299
++QSFD+ N +KW F++N L ++ NIS I
Sbjct: 408 YFQSFDSKNEEKW---FLLNYSNLCEKKNNISAMII 440
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 PFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTV-TRVERLIEVSHWG 421
PF GTII+ N + E + ++++ N S L + T +E +++ +G
Sbjct: 2500 PFDSPTGTIIWKNLENAVQYMENQKNVNFSNGSKNLILKTPLEETMQIDIFG 2551
>AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 30 protein.
Length = 305
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 364 IVFVVNAELLFSERPNISVRSINNCSINL*ERLHLGNDSTVFVFRITLVFC 212
+ V++ +LLF + + NN ++ RL L + TVF+F VFC
Sbjct: 196 VSIVLSIKLLFWNKKQSQQQHKNNNKLSKANRLALLDTCTVFLFDFIPVFC 246
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 61 SMITVCIHTPRTI 73
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 61 SMITVCIHTPRTI 73
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 166 NMLAICIHTPRTI 204
+M+ +CIHTPRTI
Sbjct: 91 SMITVCIHTPRTI 103
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 137 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC 247
Y S R+ C + Q+ L Y H K C+ KYK C
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSC 606
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 137 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC 247
Y S R+ C + Q+ L Y H K C+ KYK C
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSC 606
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 137 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC 247
Y S R+ C + Q+ L Y H K C+ KYK C
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSC 606
>AF077546-7|AAC26319.1| 534|Caenorhabditis elegans Hypothetical
protein T08E11.8 protein.
Length = 534
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 335 KELSIHYKNNSPFLTVTRVERLIEVSHWGNIA 430
KEL IHY N+S + E ++ + HW +++
Sbjct: 154 KELGIHYLNHSE--EIFDFESIVNMDHWKSLS 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,338
Number of Sequences: 27780
Number of extensions: 258782
Number of successful extensions: 692
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -