Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30888
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    69   1e-12
At1g76400.1 68414.m08878 ribophorin I family protein similar to ...    61   4e-10
At2g43050.1 68415.m05342 pectinesterase family protein contains ...    29   1.6  
At5g66870.1 68418.m08430 LOB domain family protein / lateral org...    28   3.7  
At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922...    27   5.0  
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ...    27   8.7  
At5g49390.1 68418.m06112 hypothetical protein                          27   8.7  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    27   8.7  
At2g44410.1 68415.m05523 expressed protein                             27   8.7  

>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 30/74 (40%), Positives = 45/74 (60%)
 Frame = +2

Query: 257 TKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIE 436
           T ++P ++    I YGPY N   ++   + IH++NNSPF  V  + R IE+SHWG++ I 
Sbjct: 184 TSIEPANRAGKEIKYGPYENRASYSYTPVIIHFENNSPFAVVEELVREIEISHWGSLQIT 243

Query: 437 EVIEIEHTGAKLKG 478
           E   + H GA+ KG
Sbjct: 244 ENYRLTHGGARHKG 257



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +3

Query: 36  FWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQ 215
           ++RV    PL  G TV++ V  + T +L+P+P  ITQ E Q V Y  +    SPY+   Q
Sbjct: 110 YYRVTFISPLGPGETVSLEVLYILTHSLEPFPVEITQSESQLVYYHDSAVILSPYHVKQQ 169

Query: 216 KTSVILNTKTVES 254
            T +   +  VES
Sbjct: 170 TTFIKTPSTRVES 182


>At1g76400.1 68414.m08878 ribophorin I family protein similar to
           ribophorin I [Sus scrofa] GI:9857227; contains Pfam
           profile PF04597: Ribophorin I
          Length = 614

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +2

Query: 299 YGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 478
           YGPY N+  ++   + +H+++ + F    ++ R IEVSHWGN+ + E   + H GA+LKG
Sbjct: 199 YGPYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVVHRGAQLKG 258



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   ETTVKGY-DYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGN 179
           E   KG  D +  + V L +PL+ G T+ + V   FT  LQP+P  ITQ E   V    +
Sbjct: 99  EADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQPFPEKITQGEIHLVMLQES 158

Query: 180 LYTYSPYYTSTQKTSVILNTKTVES 254
               SPY   +Q  S+ L    +ES
Sbjct: 159 AQYLSPYAVESQSLSIKLPNARIES 183


>At2g43050.1 68415.m05342 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 290 TIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHW-GNI 427
           ++ YG Y N GP +     + +    P LTVT  E+    S   GNI
Sbjct: 457 SLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNI 503


>At5g66870.1 68418.m08430 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD36) identical to
           SP|Q9FKZ3 Putative LOB domain protein 36 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 313

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 111 KALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESLPR*SLSHKLME 290
           +A Q    A  QQ + F  Y G   + SP++ +  +  ++      +S+P  S++     
Sbjct: 170 EAQQLAAVAREQQNEMFRAYGGGGGSSSPHHQNQAQAEILRFNNGFDSVPAGSVTVTGFN 229

Query: 291 QLFMDRTLMLGLSL 332
           QL    T + G+SL
Sbjct: 230 QLSSGGTAVTGMSL 243


>At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922:
           DIE2/ALG10 family
          Length = 509

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 288 PSTCEKGFTLVMIQQSLYLELHWFFVWRYST 196
           P+  ++  T + +  SLY  LHWFF + Y T
Sbjct: 118 PNLSDRKATFMALVMSLY-PLHWFFTFLYYT 147


>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 685

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 353 YKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 478
           YK++S FLT+   +   +   W  +   ++ E++ TG   KG
Sbjct: 536 YKHDSHFLTICDGKEESDEPDWCEVCEGKIEEVKETGYNWKG 577


>At5g49390.1 68418.m06112 hypothetical protein
          Length = 422

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +3

Query: 42  RVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKT 221
           ++E+ EP N G T      +   +   PY   +T      +  +     Y+P  T+   T
Sbjct: 292 QMEVAEPYNPGVTAASSTSSTQMEEADPYNPDVTAASSTSITPMEVAEPYNPDVTAASST 351

Query: 222 SV 227
           S+
Sbjct: 352 SI 353


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 71  RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 163
           +C+ KC C +C+ +S++  +     A  P C
Sbjct: 97  KCNKKCYCFDCIKRSYSERTHEEVRAACPFC 127


>At2g44410.1 68415.m05523 expressed protein 
          Length = 413

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 170 CWQFVYILPVLYLHTKN--QCNSKYKDC*IITKVKPFSQVDGT 292
           CW   Y LP++YL+ K    C+ +  D  +I         DGT
Sbjct: 145 CWGCFYQLPLIYLNIKECPVCDGEVTDAEVIPIYGNGDDCDGT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,465
Number of Sequences: 28952
Number of extensions: 228978
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)