Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30887
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3VFD0 Cluster: Cyclic nucleotide-binding domain protei...    33   7.2  
UniRef50_Q54LD5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A3VFD0 Cluster: Cyclic nucleotide-binding domain protein;
           n=1; Rhodobacterales bacterium HTCC2654|Rep: Cyclic
           nucleotide-binding domain protein - Rhodobacterales
           bacterium HTCC2654
          Length = 226

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +3

Query: 114 FYPNSTISYTLYSCRL*SDSMRRMILNNIVVSATSYIAATYSWLRLTNVLRSYRSRTII- 290
           F  +  + +  Y   + S  MRRM+L  + + A++     Y W+ L NV+  +    +I 
Sbjct: 3   FLTDGLVGHLSYIFLIVSSLMRRMMLLRLFLVASAVTGIAYDWIWLGNVVGVFWEGLLIA 62

Query: 291 -KTIQCK*DFRRDRNMKRRPVRRVICAKY 374
              +Q    + RDR  +     R + A+Y
Sbjct: 63  VNVVQIALLWHRDRRARFSDEERRMIARY 91


>UniRef50_Q54LD5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 785

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 24/91 (26%), Positives = 44/91 (48%)
 Frame = +3

Query: 6   NVNSDKIHISTA*TQLRKLNFKHSELIKFETVPSVLFYPNSTISYTLYSCRL*SDSMRRM 185
           N+N   ++++   T L  L   +SE      +P+     NST+S TL S  L S S    
Sbjct: 143 NLNIPPLNVNIETTSLNSLPISNSENNSPILLPTTTSTQNSTLSPTLLSSNLNSKSSTTT 202

Query: 186 ILNNIVVSATSYIAATYSWLRLTNVLRSYRS 278
                ++S+ S +++++S  +LT  +  + S
Sbjct: 203 TTTTGMMSSVSSLSSSFS-QQLTTPIHEFES 232


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,886,475
Number of Sequences: 1657284
Number of extensions: 10213816
Number of successful extensions: 21598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21598
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)