Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30887
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    29   5.0  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    28   8.7  

>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 198 IVVSATSYIAATYSWLRLTNVLRSYRSRTIIKTIQCK 308
           +VV+  S+  A + W++ T +    RS   + T+ CK
Sbjct: 195 LVVTVISFSLAIWQWMKATVLQEKIRSCCSVSTVDCK 231


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 56   EIKFQTL*TNKI*NRSFCSLLSKFNYFL---HIVFLPSLK 166
            +I F+    N    RSFC LLS F Y L   H+ F+  LK
Sbjct: 1666 QIHFKVFMDNFELTRSFCCLLSSFFYVLRVHHLEFVEKLK 1705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,638
Number of Sequences: 37544
Number of extensions: 266009
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)