Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30887
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_16673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 117 YPNSTISYTLYSCRL*SDSMRRMILNNIVVS-ATSYIAATYSWLRLTNVLRSYRSRTI 287
           YP   I +T Y+ +L +D  R+M    +V+S AT      YS L    + R  ++ T+
Sbjct: 155 YPTPQIIWTRYNGKLSADRTRKMPNGTLVISKATRGDGGAYSCLVTNELGRDLKNFTV 212


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 621 GTCGIYHLKRTWFRWYDVTGRVKNSG 698
           GTCG  +LK   F W   +G+  +SG
Sbjct: 299 GTCGFINLKNDKFDWTRQSGKTPSSG 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,528
Number of Sequences: 59808
Number of extensions: 340593
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)