Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30883
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    29   0.48 
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    28   1.1  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    27   2.6  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   6.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   6.0  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   7.9  

>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 148 KEIRNVYGNPTLYVTENGWS 207
           + IR ++  PT ++ ENGWS
Sbjct: 542 ENIRTIFAKPTAHIGENGWS 561


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = -3

Query: 340 HSKLSIIDQAVYPLI---SLPSSIVSKSAFKYSYNIALGHRRSDQRQWTSR 197
           H K   +   + PL+   S P  IVS  A K  Y  A+         WTSR
Sbjct: 294 HPKTPYVQMLILPLVAAVSAPIGIVSGVASKIMYGTAMWDPLQIANNWTSR 344


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 133 FYKLFKEIRNVYGNPTLYVTENGWSTDAGLIDDDRVRYY 249
           F  +FK IR  Y      V +   S D  L D DR+R++
Sbjct: 368 FLYIFKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFH 406


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 558 EFYVSQTIQPLRKYNFYFPVYHLEVFPVRSPDPMILSSR 442
           E  VSQ  + LRK N      H    P+ +P P + SSR
Sbjct: 202 EVLVSQDEERLRKLNLPLREPHGSTGPMSTPTPALNSSR 240


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 302 GVHGLVYDRQL*MDAGLRRQIRPLRS*LHKPGTYAYSKKIRI 427
           G   +VY   L    GL   + P    +HKPG   YS  I+I
Sbjct: 86  GAPSVVYSSGLAAIYGLLSYLNPKHIAVHKPGFGGYSGTIQI 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 350 TLHPFKVVDHRPGRVPPDIAALFNSVQERIQIFL*YRTRSSS 225
           ++ PF + +H P   P D AA+ + V+E    F     RSS+
Sbjct: 437 SIRPFPISEHSPNINPLDEAAVEDEVKEEKSRFHLGHRRSST 478


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 KEIRNVYGNPTLYVTENGWSTD 213
           KE+ NVY    L+ T+  W+T+
Sbjct: 113 KELLNVYHKHFLFETDKSWATE 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,502
Number of Sequences: 5004
Number of extensions: 57771
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)