Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30883
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   81   8e-16
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   3e-14
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)                      30   1.5  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = +3

Query: 255 YLN-ALLDTIEEGSDIRGYTAWSMIDNFEWMQGYADKFGLYEVDFTSPERTRTPRKSAYI 431
           YLN AL   I++G  + GY  WS++DNFEW  GY  +FG++ VDF  P + RTP+KSA +
Sbjct: 262 YLNQALKSVIKDGVQLTGYFLWSLMDNFEWDDGYKFRFGVHHVDFDDPHKHRTPKKSALV 321

Query: 432 YKEIVRTK 455
           +KEIV  K
Sbjct: 322 FKEIVANK 329



 Score = 34.3 bits (75), Expect = 0.072
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
 Frame = +1

Query: 124 PWGFYKLFKEIRNVYGNPTLYVTENGWST--------DAGLIDDDRVRYYR 252
           P+G  K+   I+  Y NP + +TENG+S         DA L D  RV Y +
Sbjct: 210 PFGLRKILNWIKGNYNNPEIIITENGFSCDGEEDLSGDAALEDTHRVNYLK 260


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +3

Query: 255 YLNALLDTIE-EGSDIRGYTAWSMIDNFEWMQGYADKFGLYEVDFTSPERTRTPRKSAYI 431
           Y+N +    + +G  ++GY AWS++DNFEW QGY   FG++ V+FT P R R P+KSA  
Sbjct: 434 YINEVYKAYKLDGVKVKGYYAWSLMDNFEWFQGYNMPFGIHFVNFTDPNRPRLPKKSAIF 493

Query: 432 YKEIV 446
           YK+IV
Sbjct: 494 YKKIV 498



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 121 VPWGFYKLFKEIRNVYGNPTLYVTENGWS 207
           VPWG  K  K  ++ YG+P + +TENG S
Sbjct: 381 VPWGLRKFLKYFKDNYGDPEVIITENGCS 409


>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
          Length = 909

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 234 PSAIL*EYLNALLDTIEEGSDIRGYTAWSMIDNFEWMQG 350
           PS+ L + LN LL T+EE  D+  YT    +   +  +G
Sbjct: 13  PSSQLQDLLNTLLSTVEENRDVEFYTTLKSVLEIQRKKG 51


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 310  RPGL*STTLNGCRVTPTNSASTKLTSQARN---VRVLQENPHTFIKK 441
            +PGL S+ +NG     T   S K  + AR+   +RVL   P T I K
Sbjct: 1007 KPGLDSSEVNGTSEELTGGNSEKTGNDARDDDKLRVLPRQPPTLIPK 1053


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,346
Number of Sequences: 59808
Number of extensions: 442645
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)