Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30882
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    36   2e-04
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.3  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   7.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 534 LFGTG-NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
           LF +G  TG+NF K ++I V+ +G+  P  ITSFE   L   +   +   + Y KP
Sbjct: 127 LFTSGITTGVNFMKLDEIEVKVTGNDAPPPITSFETSGLRPHLLENV-KKSGYTKP 181


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = -1

Query: 476 RDLVRRTSSEGQRELERS-SALGSGSFQRSFRGALVH----NPPHVARREARVGPVRVHD 312
           ++L+R+T       ++ S S+    S Q        H    NP +       + P ++  
Sbjct: 241 KELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGTMLSIHPSKLDV 300

Query: 311 HSISRIHSNALVRHSEIH 258
             ++ +HSN L  H + H
Sbjct: 301 EQMNLLHSNDLNMHQQHH 318


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 315  VNANGTDAGLATCDVRRIMNQXT 383
            +NANGT+AG      R  M + T
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRET 1467


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 315  VNANGTDAGLATCDVRRIMNQXT 383
            +NANGT+AG      R  M + T
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRET 1467


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 315  VNANGTDAGLATCDVRRIMNQXT 383
            +NANGT+AG      R  M + T
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRET 1467


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 315  VNANGTDAGLATCDVRRIMNQXT 383
            +NANGT+AG      R  M + T
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRET 1467


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 650 CQVNILKTGDAVWYAVSAGFNRY 582
           CQ   +  GDAV Y +  G++ +
Sbjct: 473 CQYCNIAFGDAVLYTIHMGYHGF 495


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 389 FRGALVHNPPHVA 351
           F  A+ H PPH A
Sbjct: 207 FLAAMAHRPPHFA 219


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 343 RPASVPFAFTIIPFLGFIPTLWFAI 269
           RP+S+ F   I+    ++P + + +
Sbjct: 313 RPSSLRFCLNILSIFTYVPMILYCV 337


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 343 RPASVPFAFTIIPFLGFIPTLWFAI 269
           RP+S+ F   I+    ++P + + +
Sbjct: 38  RPSSLRFCLNILSIFTYVPMILYCV 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,729
Number of Sequences: 336
Number of extensions: 3605
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)