Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30882
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.28
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 29 0.48
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 29 0.64
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 1.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 27 2.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 27 3.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.5
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 26 4.5
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 4.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 6.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.0
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 7.9
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +3
Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
+TGINF KY+DIPVE SG + + + F L + Q + L+ Y +P
Sbjct: 145 STGINFEKYDDIPVEVSGGDI-EPVNEFTSPPLNSHLL-QNIKLSGYTQP 192
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.28
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +3
Query: 81 QKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGRTV 260
Q P + M + Q TG++ Q+ G+ QP AP+ TG R +Q RT
Sbjct: 556 QPMAPQRTGMQPMMPQR-TGMQPQMPGMQ-QPMAPQRTGMQPMMPQRTGMQQPMAPQRTG 613
Query: 261 DLRMANQSVGMNPR 302
M Q GM P+
Sbjct: 614 MQPMMPQRTGMQPQ 627
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 628 LVMQSGTRSPLASTGISSYLEKLIPVLPVPN--SNSSCRSSRVTVLSN 491
L + G S AS+ + S + K P++ + SNS+CR+S++T L+N
Sbjct: 49 LTAEIGCGSGCASSFLKSGILKNKPIVHFMSDISNSACRASKITALNN 96
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 180 APKSTGRYIPPHLRRQLQATSDQGRTVDLRMAN-QSVGMNPRNGMIVNANGTDAGLATCD 356
A S +Y+ H R+ A++ R+V SV NP N I+ TD +A D
Sbjct: 251 ASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHNDFILATCSTDKTIALWD 310
Query: 357 VRRIMNQXTT 386
+R + + T
Sbjct: 311 LRNLNQRLHT 320
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 379 APRNDRWKEPEPRAEERSNSRWPSDDVR 462
APR R+ E +ERS SR P+ D R
Sbjct: 39 APRESRYYRKEEHLQERSRSRSPARDSR 66
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 566 EIDPGVASAEQQ*FLSFIASNGTVQSFSSLRD----LVRRTSSEGQRELERSSALG 411
++DP + + Q L + A G + L D L+R+ +GQ L R++A+G
Sbjct: 97 DVDPTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVG 152
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 473 DLVRRTSSEGQRELERSSALGSGSFQRSF-RGALVHNPPHVA 351
DL + + + +R S S++ SF RG + HNPPH A
Sbjct: 229 DLPSSSQNNCKANWKRWFGFKSVSWKNSFGRGKIAHNPPHDA 270
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 467 LDLAKTRMIGQYRYSR*TTGTIAVRHWQHRDQFLQIRGYTG*SQRRPRTRLHHQ 628
+DL + +++G YRY + + R+ ++ LQ G G S + R +HH+
Sbjct: 76 IDLTREQVLGLYRYFKWNRERLLERYIDAPEESLQKAG-VGLSGSKQREVVHHE 128
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 527 FLSFIASNGTVQSFSSLRDLVRRTSSEGQRELERSSALG-SGSFQRSF 387
F +F+A NG V +F+S V+ + + ELE + G +G + + F
Sbjct: 345 FSAFLAINGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNGPYTQLF 392
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -1
Query: 521 SFIASNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNPPHVAR 348
+F + + F++ R R++S RSS+ S S RS+ +L +P R
Sbjct: 42 AFYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEPLR 99
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 610 TRSPLASTGISSYLEKLIPVLPVPNSNSSCRSSRVTVL 497
TR+PL S +S+ LEK L + SS + + V L
Sbjct: 1878 TRAPLISNSVSASLEKFASALDLEACFSSSKPAEVAKL 1915
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 347 REARVGPV----RVHDHSISRIHSNALVRHSEIHCSTLIRGCLQLPTQMRGYVATSTLRS 180
RE V PV + D+S ++ + S ++C L++ L+L +++ Y + L
Sbjct: 382 REFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNCIELVQILLRLLSEVVTYETSLFLNF 441
Query: 179 LGLQVQTSKLLL*TCSI 129
L +V LLL T +
Sbjct: 442 LDEKVSAELLLLGTLQL 458
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 521 TGTIAVRHWQHRDQFLQI 574
TG I VRHW+H D ++
Sbjct: 104 TGMIEVRHWEHIDALSEL 121
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 131 ILVGNITHITTKRYVFLGTLLQKYLKHSLQ*ILH 30
+L IT T + Y+F+G + + LKH + +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 180 APKSTGRYIPPHLRRQLQATSDQGRTV 260
AP + G++IPP + ++L D G +
Sbjct: 189 APVNAGKFIPPGVGKRLATVDDSGTLI 215
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 430 SNSRWPSDDVRRTRSRKDENDWTVPLLAMNDRNYCCSALATPGSISPNTRIYRLKPAETA 609
SNSR P+DD T T P + ++ + TP + +P R PA +
Sbjct: 223 SNSRLPTDDSSHTVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAAQAPLIRSVSEYPANVS 282
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 661 AISSVRLTSSKLVMQSGTRSPLASTGISSYLEKLIPVLPVPNSNSSCRSSRVTVLSNHS 485
+++S TSS L S T S LAS+ I+S + ++SS SS + S +S
Sbjct: 108 SLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNS 166
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 29 CAKFIVDCVLNIFGAKFPKK 88
CA+FI+DC F +F K+
Sbjct: 295 CARFILDCDRKYFNTEFEKR 314
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 362 PHVARREARVGPVRVHDHSISRIHSNALVRHSEIHCSTLIRGCLQLPT 219
PH ++ VGPVR+ + SR S++ S + S L+ G P+
Sbjct: 494 PHKPASQSNVGPVRISSNRRSRKFSSS----SRVSVSNLLAGSPPSPS 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,816
Number of Sequences: 5004
Number of extensions: 63374
Number of successful extensions: 230
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -