Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30882
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 52 4e-07
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 46 2e-05
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 46 2e-05
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556 31 0.88
06_01_0169 - 1346281-1349188,1350069-1350184 30 1.5
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 30 2.0
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 29 2.7
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 29 3.5
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 29 4.7
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 29 4.7
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 4.7
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 28 6.2
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 28 8.2
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 28 8.2
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 537 FGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
F T NTGINF YEDIPVE SG VP + +F +++L + + + + +Y KP
Sbjct: 208 FDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDAL-NENIRRCKYVKP 260
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
NTGINF YEDIPVE SG VP + +F +++L + + I +Y +P
Sbjct: 130 NTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNI-RRCKYVRP 178
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
NTGINF YEDIPVE SG VP +F +++L + + + + +Y KP
Sbjct: 298 NTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDAL-NENIRRCKYVKP 346
>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
Length = 693
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = -1
Query: 425 SSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIHSNALVRHSEIHCSTL 246
S LG GSF + ++G L N P + V R D + I + ++ ++ I L
Sbjct: 421 SEVLGQGSFGKVYKGTLEDNTPVAVKTSIEVNEARKDDFTNEVIIQSQMMHNNII---KL 477
Query: 245 IRGCLQLPTQMRGY 204
+ CL++ M Y
Sbjct: 478 LGCCLEVDVPMLVY 491
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 618 SLVRGLRWLQPVYPRIWRN*SRCCQCRTAIVPVVHRE 508
S +RG+R+ + P + R CCQ R+ IV + H E
Sbjct: 894 SELRGIRFEKDALPHMERMEIECCQLRSGIVGIKHLE 930
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 570 KYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
KY DIPVE SG+ VP FE L E + + + Y+ P
Sbjct: 67 KY-DIPVEVSGEDVPPPADGFEAAGLVEAVLRNV-ARCGYESP 107
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = -2
Query: 625 VMQSGTRSPLASTGISSY-----LEKLIPVLPVPNSNSSCRSSRVTVLS 494
++++ + LA+ SSY L+ +P++ S SSC SSRV +S
Sbjct: 199 LLETSRKGYLAAVSASSYSFISLLQHFLPIMNPVRSESSCSSSRVIAIS 247
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 455 SSEGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIH 291
+++ + L+ ++A SGS ++ L+H P R A V P V+ + IH
Sbjct: 194 AAQVEASLQAAAASTSGSKRKQAADDLIHAPASSRHRHADVMPAGVNGDEVGSIH 248
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 87 NVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQG 251
++P S+ S+ ++ T A L L+ P S+GR IPP LR ++S QG
Sbjct: 23 SIPASSSSSSSSSSTTTAA----ASLPLRAAVPPSSGRRIPP-LRCASSSSSSQG 72
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 338 RVGPVRVHDHSISRIHSN-ALVRHSEIHCST 249
RVGP+ H + I+SN ALV H+E+ CST
Sbjct: 221 RVGPI----HCVPLINSNEALVLHTELWCST 247
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 521 SFIASNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRS 390
SF N V +++R+ T +G E++RSS L + S+Q+S
Sbjct: 410 SFSDINKNVSGLANIRNSTN-TRIDGHAEMQRSSTLSTRSYQKS 452
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 286 LE*IREME*S*TRTGPTRASRRAT*GGL*TXAPRNDRWKEPEPRAEERSNSRWPSDDVRR 465
L+ I+ +E R+ R RRA + + AP D W EP+P EE+ DD R
Sbjct: 44 LDEIKHVEEEVLRSPRRRRVRRAP--EIASAAPAVDDWHEPDPIEEEQDED--DDDDARE 99
Query: 466 TR 471
R
Sbjct: 100 ER 101
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 458 TSSEGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARV 333
TSS+ Q + +R LGSG+F + + G N A +E +V
Sbjct: 272 TSSQFQSQWKRGKLLGSGTFGQVYLGFNSENGQFCAIKEVQV 313
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 392 SFRGALVHNPPHVARREARVGPVR 321
+FR +VH+ P A+ + R+GP R
Sbjct: 451 TFRSTIVHSTPIPAKEQPRIGPSR 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,273,968
Number of Sequences: 37544
Number of extensions: 459720
Number of successful extensions: 1611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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