Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30882
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 4e-04
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10) 28 6.3
SB_47249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +3
Query: 534 LFGTGNTGINFSKYEDIPVEASGDRVP 614
LF + NTGINF KY+DIPVEA+G P
Sbjct: 3 LFASHNTGINFEKYDDIPVEATGQECP 29
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 525 ELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
+LL +TGI F YE+IP + SG+ P ITSF ++ E + I S A Y +P
Sbjct: 446 DLLFQDAPHTGIKFDNYENIPSKVSGENQPPKITSFNELPFGEQLMANI-SRAGYRRP 502
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/64 (39%), Positives = 32/64 (50%)
Frame = +3
Query: 507 TRDERQELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLAR 686
T E +E + T GINF KY+ I V SG+ I SFE+ NL E + A+
Sbjct: 672 TPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRK-AQ 730
Query: 687 YDKP 698
Y KP
Sbjct: 731 YKKP 734
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/64 (39%), Positives = 32/64 (50%)
Frame = +3
Query: 507 TRDERQELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLAR 686
T E +E + T GINF KY+ I V SG+ I SFE+ NL E + A+
Sbjct: 95 TPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRK-AQ 153
Query: 687 YDKP 698
Y KP
Sbjct: 154 YKKP 157
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 34.7 bits (76), Expect = 0.073
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Frame = +3
Query: 102 SNMSNVTNQNGTGLEQQLAGLDLQ------PQAPKSTG-----RYIPPHLRRQLQA 236
S MS+V + N L+Q+ AGLDL P A ++ RYIPPHLR + Q+
Sbjct: 710 SVMSHVAHGNNQSLDQRFAGLDLNSGVGQSPDAGRNPNQPTQQRYIPPHLRGKQQS 765
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 331 PTRASRRAT*GGL*TXAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDEND 492
P R+SRR G + R R +E E EER ++ R R RKD+ D
Sbjct: 112 PARSSRRRDQDGSGYISSR--RRREVEKEEEERQREEEEEEERERARRRKDQED 163
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 673 NICPAISSVRLTSSKLVMQSGTRSPLASTGISSYLEKLIPVLPVPNSNSSCRSSRVTVLS 494
N+ + SS + S + S S A+ SS + I PN S+ R+++ TVLS
Sbjct: 613 NLSASSSSPSTSVSDAAVSSYLSSKPATDASSSAYDSSISSTESPNETSTVRANQTTVLS 672
Query: 493 NHS 485
N S
Sbjct: 673 NVS 675
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 329 PVRVHDHSISRIHSNALVRHSEIHCSTLIRGC 234
PV HD S +HS + + H E +T +GC
Sbjct: 766 PVEFHDDSFRDLHSISRLHHKEPDLATFEKGC 797
>SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 169 KSRPASCCSRPVPFWLVTLLILLPSGTFFWELCSKNI*NTVYNE 38
KS P +C S P+ L+ LL +LP W+L S + T N+
Sbjct: 255 KSTPRNCGSCPIKE-LLPLLKVLPFNVLLWQLFSPSAPQTTVNK 297
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +3
Query: 66 LEQSSQKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSD 245
+E+SS+ + S + T +N +G LD+QP+ PK T I L R ++AT
Sbjct: 551 IEESSRDD----SGLYRCTARNKSGTADMTFQLDVQPKKPKGTAPEIVSEL-RPVEATEG 605
Query: 246 QGRTVDLRMANQSV 287
+ ++ + V
Sbjct: 606 DDAVLSCTISGKPV 619
>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
Length = 460
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 112 VMLPTKMEQV*SSSLLVWTCSPRLLRVLVATYPRICVGNCR 234
VM+ + +V +LV+TCS L V AT P + G+CR
Sbjct: 343 VMMAEVISEV-MKKILVFTCSGDLGHVTSATSPEVEEGDCR 382
>SB_47249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 679 RDNICPAISSV---RLTSSKLVMQSGTRSPLASTGISSYLEKLIPVLPVPNSN 530
RD++ P I R+ V +G AST +SYL L P+ +PN +
Sbjct: 17 RDSLAPCIECKARGRVEEKIEVTLTGVAPSSASTSYASYLRALTPIHVLPNDS 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,473
Number of Sequences: 59808
Number of extensions: 506154
Number of successful extensions: 1493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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