Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30882
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       45   8e-07
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ELLLFGTG-NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
           E  LF  G   GINF KY++I V  SGD VP  I SFE   L  ++   I   + Y KP
Sbjct: 162 EKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESFEAAGLRNIVLDNI-KKSGYKKP 219


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 639 HPQNW*CSLVRGLRWLQPVYPRIWR 565
           H   W  S   G+R ++  Y R+WR
Sbjct: 65  HHLKWNASEFAGIRVIRVPYNRVWR 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 543  TGNTGINFSKYEDIPVEASGDRVPDCITSF 632
            TG+T +   +   +  +   +RVP  ITSF
Sbjct: 1290 TGSTRVGEGQSSKVAAQVPTNRVPARITSF 1319


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 543  TGNTGINFSKYEDIPVEASGDRVPDCITSF 632
            TG+T +   +   +  +   +RVP  ITSF
Sbjct: 1286 TGSTRVGEGQSSKVAAQVPTNRVPARITSF 1315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,553
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)