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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30882
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    48   6e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    48   8e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    48   8e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    48   8e-06
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    30   1.7  
At4g02010.1 68417.m00271 protein kinase family protein contains ...    30   1.7  
At5g14730.1 68418.m01728 expressed protein                             29   2.2  
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    29   3.0  
At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive near...    28   5.2  
At2g39560.1 68415.m04853 expressed protein                             28   5.2  
At2g21930.1 68415.m02605 F-box family protein contains F-box dom...    28   5.2  
At5g58360.1 68418.m07307 ovate family protein 69% similar to ova...    28   6.8  
At3g20200.1 68416.m02560 protein kinase family protein contains ...    28   6.8  
At5g39000.1 68418.m04718 protein kinase family protein contains ...    27   9.0  
At5g24010.1 68418.m02821 protein kinase family protein contains ...    27   9.0  
At2g05000.1 68415.m00521 hypothetical protein  and genefinder          27   9.0  
At1g64340.1 68414.m07291 hypothetical protein                          27   9.0  

>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = +3

Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
           NT INF  YEDIP+E SGD VP  + +F +++L E +   I    +Y KP
Sbjct: 121 NTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI-QRCKYVKP 169


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELI 659
           NTGINF  YEDIPVE SG  VP  + +F D++L + +
Sbjct: 126 NTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDAL 162


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELI 659
           NTGINF  YEDIPVE SG  VP  + +F D++L + +
Sbjct: 126 NTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDAL 162


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = +3

Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698
           NT INF  YEDIP+E SGD VP  + +F +++L E +   I    +Y KP
Sbjct: 134 NTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI-RRCKYVKP 182


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 SNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ 248
           S   N + +    +     L  + P+S+ +Y+ PHLR Q ++ S++
Sbjct: 232 SETVNYHDSPSSLEKVDTPLHERKPESSSKYVAPHLRSQAKSESEE 277


>At4g02010.1 68417.m00271 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 725

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = -1

Query: 503 GTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGP- 327
           G++   +S R L      E     E +S LG G F + +RG L        ++    GP 
Sbjct: 357 GSLPHPASTRFLSYEELKEATSNFESASILGEGGFGKVYRGILADGTAVAIKKLTSGGPQ 416

Query: 326 ----VRVHDHSISRIHSNALVR 273
                +V    +SR+H   LV+
Sbjct: 417 GDKEFQVEIDMLSRLHHRNLVK 438


>At5g14730.1 68418.m01728 expressed protein
          Length = 246

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 527 FLSFIASNGTVQSFS-----SLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNP 363
           FL    S+G V + S     S +DL+RR+ S+G  E    S  G+GS     R       
Sbjct: 158 FLRRSHSDGAVSTVSATKRCSFKDLLRRSHSDGGGEGSSISTSGNGSLVVKGRNKTAAYK 217

Query: 362 PHVARREARVGPVR 321
           P V +R     P R
Sbjct: 218 PDVDKRRKSYLPYR 231


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 579 DIPVEASGDRVPDCITSFEDVNLTELIAGQILSLA 683
           D  V+ S D++P C++SF+ +N T +I     +L+
Sbjct: 369 DCNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLS 403


>At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive nearly
           identical to gi:2257743
          Length = 544

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 368 YEPXHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRY 508
           Y P   G    +SR    K+V     L      LD+A TRM+GQY +
Sbjct: 367 YNPTAPGTVITRSRDMS-KAVLTSIVLKRNVTMLDIASTRMLGQYGF 412


>At2g39560.1 68415.m04853 expressed protein
          Length = 233

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 460 RRTRSRKD-ENDWTVPLLAMNDRNYCCSALATPGSISPNTRIY-RLKPAETAYQ 615
           R T  R D  ND++ P        +CCS+   P S SP++  +   KP +T  Q
Sbjct: 35  RSTTRRPDFRNDYSTPGTRELLFIFCCSSSTNPSSSSPSSSSFSNPKPIDTQQQ 88


>At2g21930.1 68415.m02605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -1

Query: 524 LSFIASNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNPP 360
           L F  + G +  F SL D    TSS     L     L   +F  S  G + H PP
Sbjct: 15  LIFTIAGGGIHCFFSLIDQGESTSSSKPTYLMNCPHLQLKTFAPSVHGLICHGPP 69


>At5g58360.1 68418.m07307 ovate family protein 69% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 296

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 509 SNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNP 363
           S+    S   LRD +RR SS        +S   S SF+R  +   V+ P
Sbjct: 43  SSADASSSRKLRDPLRRLSSTAHHPQASNSPPKSSSFKRKIKRKTVYKP 91


>At3g20200.1 68416.m02560 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 780

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -1

Query: 449 EGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIHSNALVRH 270
           E     ++++ +G G +   ++G L H P  VA +  +   V+        +   + +RH
Sbjct: 448 EATNSFDKANKIGEGGYGPVYKGYLDHTP--VAIKALKADAVQGRSQFQREVEVLSCIRH 505

Query: 269 SEIHCSTLIRGCLQLPTQMRGYVATSTL 186
              H   LI  C +    +  Y+A  +L
Sbjct: 506 P--HMVLLIGACPEYGVLVYEYMAKGSL 531


>At5g39000.1 68418.m04718 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 873

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
 Frame = +3

Query: 141 LEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGRTVDLRM-ANQSVGMNPR----- 302
           +E Q A L++      S G +IP +L   + A S  GR  DLR+  +  V +NP+     
Sbjct: 338 IENQTATLEMDVFR-MSGGSWIPMYLDYTVIAGSGSGRRHDLRLDLHPLVSINPKYYDAI 396

Query: 303 -NGM-IVNANGTDAGLA 347
            NG+ I+  N  D  LA
Sbjct: 397 LNGVEILKMNDPDGNLA 413


>At5g24010.1 68418.m02821 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 824

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -1

Query: 446 GQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIHSNALVRHS 267
           G    +RS  +G G F   FRG+L  N   VA +    G  +     +S I   + +RH 
Sbjct: 485 GTNNFDRSLVIGVGGFGMVFRGSLKDN-TKVAVKRGSPGSRQGLPEFLSEITILSKIRHR 543

Query: 266 EIHCSTLIRGC 234
             H  +L+  C
Sbjct: 544 --HLVSLVGYC 552


>At2g05000.1 68415.m00521 hypothetical protein  and genefinder
          Length = 165

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 305 ISRIHSNALVRHSEIHCSTLIRGCLQLPTQMRGYVATSTLRSLGLQVQTSKL 150
           ++  H +AL RH ++ C+  +    ++   M+G + T T R L  +V+  +L
Sbjct: 85  VNHSHYSAL-RHGQLACNHALEFVQEIVRLMQGEIETLTERLLAKEVEIDRL 135


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 516 ERQELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLAR 686
           ++Q   LF TG++G++  KY  +      D+     T  E    TE++  +I SL R
Sbjct: 196 QKQSNALFKTGHSGVDMDKYYVV-----FDKTGSLTTIPESGESTEMVGSEINSLVR 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,030
Number of Sequences: 28952
Number of extensions: 346214
Number of successful extensions: 1179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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