BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30882 (698 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 6e-06 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 48 8e-06 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 48 8e-06 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 48 8e-06 At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 30 1.7 At4g02010.1 68417.m00271 protein kinase family protein contains ... 30 1.7 At5g14730.1 68418.m01728 expressed protein 29 2.2 At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste... 29 3.0 At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive near... 28 5.2 At2g39560.1 68415.m04853 expressed protein 28 5.2 At2g21930.1 68415.m02605 F-box family protein contains F-box dom... 28 5.2 At5g58360.1 68418.m07307 ovate family protein 69% similar to ova... 28 6.8 At3g20200.1 68416.m02560 protein kinase family protein contains ... 28 6.8 At5g39000.1 68418.m04718 protein kinase family protein contains ... 27 9.0 At5g24010.1 68418.m02821 protein kinase family protein contains ... 27 9.0 At2g05000.1 68415.m00521 hypothetical protein and genefinder 27 9.0 At1g64340.1 68414.m07291 hypothetical protein 27 9.0 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 48.0 bits (109), Expect = 6e-06 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = +3 Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698 NT INF YEDIP+E SGD VP + +F +++L E + I +Y KP Sbjct: 121 NTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI-QRCKYVKP 169 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 47.6 bits (108), Expect = 8e-06 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELI 659 NTGINF YEDIPVE SG VP + +F D++L + + Sbjct: 126 NTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDAL 162 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 47.6 bits (108), Expect = 8e-06 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELI 659 NTGINF YEDIPVE SG VP + +F D++L + + Sbjct: 126 NTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDAL 162 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 47.6 bits (108), Expect = 8e-06 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = +3 Query: 549 NTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLARYDKP 698 NT INF YEDIP+E SGD VP + +F +++L E + I +Y KP Sbjct: 134 NTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI-RRCKYVKP 182 >At5g17930.1 68418.m02102 MA3 domain-containing protein low similarity to SP|Q9P6R9 Cell cycle control protein cwf22 {Schizosaccharomyces pombe}; contains Pfam profile PF02847: MA3 domain Length = 707 Score = 29.9 bits (64), Expect = 1.7 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +3 Query: 111 SNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ 248 S N + + + L + P+S+ +Y+ PHLR Q ++ S++ Sbjct: 232 SETVNYHDSPSSLEKVDTPLHERKPESSSKYVAPHLRSQAKSESEE 277 >At4g02010.1 68417.m00271 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 725 Score = 29.9 bits (64), Expect = 1.7 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Frame = -1 Query: 503 GTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGP- 327 G++ +S R L E E +S LG G F + +RG L ++ GP Sbjct: 357 GSLPHPASTRFLSYEELKEATSNFESASILGEGGFGKVYRGILADGTAVAIKKLTSGGPQ 416 Query: 326 ----VRVHDHSISRIHSNALVR 273 +V +SR+H LV+ Sbjct: 417 GDKEFQVEIDMLSRLHHRNLVK 438 >At5g14730.1 68418.m01728 expressed protein Length = 246 Score = 29.5 bits (63), Expect = 2.2 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = -1 Query: 527 FLSFIASNGTVQSFS-----SLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNP 363 FL S+G V + S S +DL+RR+ S+G E S G+GS R Sbjct: 158 FLRRSHSDGAVSTVSATKRCSFKDLLRRSHSDGGGEGSSISTSGNGSLVVKGRNKTAAYK 217 Query: 362 PHVARREARVGPVR 321 P V +R P R Sbjct: 218 PDVDKRRKSYLPYR 231 >At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009 : Glycerophosphoryl diester phosphodiesterase family; similar to glycerophosphodiester phosphodiesterase (GI:1399038) [Borrelia hermsii] Length = 729 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +3 Query: 579 DIPVEASGDRVPDCITSFEDVNLTELIAGQILSLA 683 D V+ S D++P C++SF+ +N T +I +L+ Sbjct: 369 DCNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLS 403 >At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive nearly identical to gi:2257743 Length = 544 Score = 28.3 bits (60), Expect = 5.2 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +2 Query: 368 YEPXHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRY 508 Y P G +SR K+V L LD+A TRM+GQY + Sbjct: 367 YNPTAPGTVITRSRDMS-KAVLTSIVLKRNVTMLDIASTRMLGQYGF 412 >At2g39560.1 68415.m04853 expressed protein Length = 233 Score = 28.3 bits (60), Expect = 5.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +1 Query: 460 RRTRSRKD-ENDWTVPLLAMNDRNYCCSALATPGSISPNTRIY-RLKPAETAYQ 615 R T R D ND++ P +CCS+ P S SP++ + KP +T Q Sbjct: 35 RSTTRRPDFRNDYSTPGTRELLFIFCCSSSTNPSSSSPSSSSFSNPKPIDTQQQ 88 >At2g21930.1 68415.m02605 F-box family protein contains F-box domain Pfam:PF00646 Length = 335 Score = 28.3 bits (60), Expect = 5.2 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -1 Query: 524 LSFIASNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNPP 360 L F + G + F SL D TSS L L +F S G + H PP Sbjct: 15 LIFTIAGGGIHCFFSLIDQGESTSSSKPTYLMNCPHLQLKTFAPSVHGLICHGPP 69 >At5g58360.1 68418.m07307 ovate family protein 69% similar to ovate protein (GI:23429649) [Lycopersicon esculentum]; contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 Length = 296 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 509 SNGTVQSFSSLRDLVRRTSSEGQRELERSSALGSGSFQRSFRGALVHNP 363 S+ S LRD +RR SS +S S SF+R + V+ P Sbjct: 43 SSADASSSRKLRDPLRRLSSTAHHPQASNSPPKSSSFKRKIKRKTVYKP 91 >At3g20200.1 68416.m02560 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 780 Score = 27.9 bits (59), Expect = 6.8 Identities = 19/88 (21%), Positives = 37/88 (42%) Frame = -1 Query: 449 EGQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIHSNALVRH 270 E ++++ +G G + ++G L H P VA + + V+ + + +RH Sbjct: 448 EATNSFDKANKIGEGGYGPVYKGYLDHTP--VAIKALKADAVQGRSQFQREVEVLSCIRH 505 Query: 269 SEIHCSTLIRGCLQLPTQMRGYVATSTL 186 H LI C + + Y+A +L Sbjct: 506 P--HMVLLIGACPEYGVLVYEYMAKGSL 531 >At5g39000.1 68418.m04718 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 873 Score = 27.5 bits (58), Expect = 9.0 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%) Frame = +3 Query: 141 LEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGRTVDLRM-ANQSVGMNPR----- 302 +E Q A L++ S G +IP +L + A S GR DLR+ + V +NP+ Sbjct: 338 IENQTATLEMDVFR-MSGGSWIPMYLDYTVIAGSGSGRRHDLRLDLHPLVSINPKYYDAI 396 Query: 303 -NGM-IVNANGTDAGLA 347 NG+ I+ N D LA Sbjct: 397 LNGVEILKMNDPDGNLA 413 >At5g24010.1 68418.m02821 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 824 Score = 27.5 bits (58), Expect = 9.0 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -1 Query: 446 GQRELERSSALGSGSFQRSFRGALVHNPPHVARREARVGPVRVHDHSISRIHSNALVRHS 267 G +RS +G G F FRG+L N VA + G + +S I + +RH Sbjct: 485 GTNNFDRSLVIGVGGFGMVFRGSLKDN-TKVAVKRGSPGSRQGLPEFLSEITILSKIRHR 543 Query: 266 EIHCSTLIRGC 234 H +L+ C Sbjct: 544 --HLVSLVGYC 552 >At2g05000.1 68415.m00521 hypothetical protein and genefinder Length = 165 Score = 27.5 bits (58), Expect = 9.0 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -1 Query: 305 ISRIHSNALVRHSEIHCSTLIRGCLQLPTQMRGYVATSTLRSLGLQVQTSKL 150 ++ H +AL RH ++ C+ + ++ M+G + T T R L +V+ +L Sbjct: 85 VNHSHYSAL-RHGQLACNHALEFVQEIVRLMQGEIETLTERLLAKEVEIDRL 135 >At1g64340.1 68414.m07291 hypothetical protein Length = 265 Score = 27.5 bits (58), Expect = 9.0 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +3 Query: 516 ERQELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELIAGQILSLAR 686 ++Q LF TG++G++ KY + D+ T E TE++ +I SL R Sbjct: 196 QKQSNALFKTGHSGVDMDKYYVV-----FDKTGSLTTIPESGESTEMVGSEINSLVR 247 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,928,030 Number of Sequences: 28952 Number of extensions: 346214 Number of successful extensions: 1179 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1177 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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