Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30880
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 YPTLKIFRKGELSSEYNGPRESNGIVKY 435
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 462 GAGSNLGTHVLDNAIRFPWSIVLG 391
           G G  L +H++   +  P S+++G
Sbjct: 128 GGGIELISHIISKQLHIPVSVLMG 151


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 752 KLWSEHFLGVSVESNRKS 699
           K + E+FL ++VE+NR++
Sbjct: 406 KGFEEYFLNLTVENNRRN 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,797
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)