Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30879
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 450 SWIVQFEGPQEITRVLELFSNSE 382
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 86  PWYQPSFTEVRKVLQLFRLRQINNG 160
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 IQLVVGARRPFIMSTGETLVTARQDQRSSQEDGLNK*IY 559
           I +VV   +  ++S GET +  + +   + +DG  + +Y
Sbjct: 166 IDVVVPITQFTLLSIGETAMGIKLNASDNDKDGYKRAVY 204


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 IQLVVGARRPFIMSTGETLVTARQDQRSSQEDGLNK*IY 559
           I +VV   +  ++S GET +  + +   + +DG  + +Y
Sbjct: 166 IDVVVPITQFTLLSIGETAMGIKLNASDNDKDGYKRAVY 204


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 431 SN*TIQLVVGARRPFIMSTGETLVTARQDQ 520
           +N T   VVG R P++   G    T  ++Q
Sbjct: 290 ANLTDNSVVGVRAPYLRVGGNNQFTMMEEQ 319


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 16  PDKHAIVATTTFPGKP 63
           P KH +   T  PG+P
Sbjct: 267 PSKHGLNDATAAPGEP 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,472
Number of Sequences: 336
Number of extensions: 3677
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)