Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30879
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 125 4e-30
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 121 6e-29
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 90 2e-19
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.47
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 29 0.62
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 1.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 4.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.7
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 7.7
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 125 bits (302), Expect = 4e-30
Identities = 55/96 (57%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
GIP K L+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG FK
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK 203
Query: 406 YASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 510
A+NFLWPFKL++P GGWR +K H+++GGD G R+
Sbjct: 204 QAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRD 239
Score = 65.7 bits (153), Expect = 4e-12
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +2
Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
+ RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G PN K+VR
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVR 152
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +3
Query: 3 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
+I LAR+AR GNY+VP E KL FV+RIRGIN + PK+ K L
Sbjct: 69 QIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 121 bits (292), Expect = 6e-29
Identities = 52/96 (54%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
GIP LK L+YKRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG FK
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK 204
Query: 406 YASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 510
A+NF+WPF+L++P GGWR +K H+++GGD G R+
Sbjct: 205 QAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRD 240
Score = 70.9 bits (166), Expect = 1e-13
Identities = 30/48 (62%), Positives = 39/48 (81%)
Frame = +2
Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
+ RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+VR
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVR 153
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = +3
Query: 3 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
+I L R+AR GNYYVP E KL FVIRIRGIN + PK+ K L
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 90.2 bits (214), Expect = 2e-19
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
GIP L L+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG FK
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFK 202
Query: 406 YASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFG 501
+ FLWPF L KK H+ +G G
Sbjct: 203 EVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +2
Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
++RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVR
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVR 151
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +3
Query: 6 IRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
IRL R A+N+G+ +VP E KL FVIRI G+ + PK K L
Sbjct: 69 IRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 464 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 330
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.62
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 408 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*PRTLFKLG 232
+L +F+ +D M L T+N + +L +A W TL G + F Y + LG
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALG 375
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 477 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 382
MNGL P W + GP + R++ F E
Sbjct: 75 MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 290 PLSLANPRLYTNHGHSLSWG 231
P +L N R Y+NH H L G
Sbjct: 51 PRTLLNSRYYSNHSHGLVHG 70
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.7
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 467 FLRQPPVGLFNL---KGHRKLLAYLNFSP-TVKISWMRSSTQIMLCLWSLFSTMLLEVIG 300
+LR+P + N KG L+ +F+ T + S + S LC F+ E IG
Sbjct: 854 YLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKVHGSWISSLCSSQAFA----EFIG 909
Query: 299 IRCPLSLANPRL 264
RC L L +PR+
Sbjct: 910 DRCELDLNDPRV 921
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 443 LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGI 297
LF+L G L ++ + T+K SW ++ + L + ++++ I
Sbjct: 76 LFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,290
Number of Sequences: 5004
Number of extensions: 57007
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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