Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30879
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 134 6e-32
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 128 3e-30
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 87 7e-18
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 1.1
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691 28 4.5
02_03_0324 - 17709535-17709789,17711118-17711228,17711872-177120... 28 4.5
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 28 5.9
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 28 5.9
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913... 28 5.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 7.8
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 7.8
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 134 bits (323), Expect = 6e-32
Identities = 58/95 (61%), Positives = 72/95 (75%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
G P LK L+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFK 199
Query: 406 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 510
A+NFLWPFKL P GG +KK HYV+GGD GNRE
Sbjct: 200 EANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE 234
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +2
Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVR
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVR 148
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 6 IRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 66 VQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 128 bits (309), Expect = 3e-30
Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 6/101 (5%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFT 387
G P LK L+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198
Query: 388 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 510
VG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE
Sbjct: 199 VGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE 239
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +2
Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVR
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVR 147
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 6 IRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
++L R+AR +G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 65 VQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 87.4 bits (207), Expect = 7e-18
Identities = 43/103 (41%), Positives = 59/103 (57%)
Frame = +1
Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
G P LK L+YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFR 201
Query: 406 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRETRSTIFSG 534
ASNFL PFKL P + K + DG + R + G
Sbjct: 202 EASNFLMPFKLKCPERRLQMKKKPFKDGAENATWRNRFPVVRG 244
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +2
Query: 113 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V+
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVK 150
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 507 AVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFME-- 334
A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1115 ASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMPKI 1174
Query: 333 -PLLNNAVGSD 304
LL+N +GSD
Sbjct: 1175 YSLLSNLIGSD 1185
>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
Length = 280
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 320 MLLEVIGIRCPLSLANPRLYTNHGHSLSWGIPKQCKARRYVA 195
MLL IG++CP+S N H +WG + RR ++
Sbjct: 194 MLLAPIGVQCPVSSLGLAGDANVLHFGAWGCTADSRIRRVIS 235
>02_03_0324 -
17709535-17709789,17711118-17711228,17711872-17712000,
17712174-17712281,17712389-17712700
Length = 304
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 457 WRKKTIHYVDGGDFGNRETRSTI 525
WR++ +DGGD G+ E R+T+
Sbjct: 199 WRQRGHRGMDGGDIGDGEARATV 221
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 35 WQLLRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 214
+QLL GS IG N ++ P + K F I G+ VN +
Sbjct: 137 YQLLFPTGSVIGHLI-NSFHTPEGAYIAKFYIDFSATYIGVGMMC---PHIVNFGLLFGA 192
Query: 215 YIAWG--YPNLKSVRG*YTNVDSPS*VDNV 298
I+WG YP L++ G + DSPS +D +
Sbjct: 193 IISWGFLYPYLETKHGEWYQTDSPSNLDGL 222
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 548 YLNHPPEKIVDLVSR-LPKSPPST 480
Y N+PPE +VD+V+R L PP T
Sbjct: 363 YRNYPPELLVDIVARILSMVPPWT 386
>01_05_0720 -
24588623-24588658,24588888-24589196,24589449-24591366,
24591412-24591693,24592027-24592328
Length = 948
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 404 LNFSPTVKISW----MRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLANPRLYTNHGHSLS 237
+N P++KI + + + I+ CL FS +L + RC L + LY H + +
Sbjct: 364 VNLVPSLKIFYGLVLAQGALYIVACLTDPFSVLLRRWLARRCKLGTRSVDLYYEHAYD-A 422
Query: 236 W 234
W
Sbjct: 423 W 423
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 319 IVEKRLHKHNIICVEDLIHEI 381
I K LH+H I VEDL+H +
Sbjct: 106 INHKHLHRHYSIGVEDLVHHV 126
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 31 IVATTTFPGKPNWHLSSESVVSTKFH 108
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,896,451
Number of Sequences: 37544
Number of extensions: 370878
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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