Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30879
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      147   6e-36
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.49 
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_14118| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.1)              29   2.6  
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)                   29   3.5  
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)                    29   3.5  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   29   3.5  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       27   8.0  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  147 bits (356), Expect = 6e-36
 Identities = 66/97 (68%), Positives = 77/97 (79%)
 Frame = +1

Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
           G P LK    L+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLIHEIFTVGE FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFK 199

Query: 406 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRETR 516
            ASNFLWPFKL++P GG+RKKT H+V+GGD GNRE +
Sbjct: 200 EASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDK 236



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 45/48 (93%)
 Frame = +2

Query: 110 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVR 253
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVR
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVR 148



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +3

Query: 3   EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 137
           E+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 65  ELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 474 NGLLAPTTSWIVQFEGPQEITRV-LELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWY 298
           NG   P  + ++    P+ ++ + +E+F      +DE +    V   E +LN     DWY
Sbjct: 32  NGANNPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWY 91

Query: 297 TLSTQLGE 274
           +LS + GE
Sbjct: 92  SLSGKQGE 99


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 16  PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 153
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_14118| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.1)
          Length = 345

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 454 GWRKKTIHYVDGGDFGNRETRSTIFSG 534
           GW+ K +H +DG  + N   +  IF G
Sbjct: 178 GWKGKVLHLIDGYGYRNNGNQHKIFDG 204


>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 244 ECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKY 408
           E PW +Y   ++  + +R  +   S VE+  +K  I+ +++   E FTV   F +
Sbjct: 24  EAPWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGE-FTVRSTFDH 77


>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
          Length = 609

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 244 ECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKY 408
           E PW +Y   ++  + +R  +   S VE+  +K  I+ +++   E FTV   F +
Sbjct: 24  EAPWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGE-FTVRSTFDH 77


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 349 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 471
           + C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 434 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 306
           LKGH K    L+++P V  + + +S    +CLW + S +  +V
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISSGISKDV 281


>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 182 ATVNMLRIAEPYIAWGYPNLKSVRG*YTNVDSP 280
           AT N+  I  PY  WG P   +VRG  T+ D P
Sbjct: 3   ATTNLPAIQHPYQEWGTPANLNVRG--TSRDDP 33


>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 444 IVQFEGPQEITRVLELFSNSEDLM---DEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 274
           I +F G +    +L    NSE LM   D+    DN+ F+E LL+ A   D   +      
Sbjct: 45  IKRFLGQEIRNDILAKVVNSEGLMSLLDDCYGYDNLRFLERLLSKANCLDLVEMLRDWKS 104

Query: 273 STFVY*PRTLFKLGY 229
           S+    PR   + GY
Sbjct: 105 SSNCLNPRLFEEFGY 119


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 IHEIFTVGEKFKYASNFLWPFKLNN 444
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -2

Query: 381 DLMDEVLNTDNVVFMEP 331
           D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,621
Number of Sequences: 59808
Number of extensions: 424006
Number of successful extensions: 1035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)