Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30879
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   146   1e-35
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   0.57 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   2.3  
AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    29   2.3  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   2.3  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  146 bits (353), Expect = 1e-35
 Identities = 65/95 (68%), Positives = 75/95 (78%)
 Frame = +1

Query: 226 GIPQLKECPWLVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 405
           G P  K    L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI TVG  FK
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFK 198

Query: 406 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 510
            A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRE
Sbjct: 199 EATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNRE 233



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +2

Query: 116 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 250
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTI 146



 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +3

Query: 6   IRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 122
           +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 65  LRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 232 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 104
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 44   LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 178
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 44   LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 178
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 347 LCLWSLFSTMLLEVIGIRCPLS-LANPRLYTNHGHSLSWGIPKQCKARRYVAYSQ*PYSD 171
           L +W + +  +L +I I+CPLS      + T HG  L + I   C      AY +  Y++
Sbjct: 114 LVVWIVVAMSILRLIAIKCPLSPRVQKTIETKHGIRLIYFI---CITLIPFAYLEIQYNN 170

Query: 170 VQTHHCL 150
           V+    L
Sbjct: 171 VRVFQTL 177


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 44   LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 178
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 35  WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 157
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 262 YKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI----HEIFTVGEKFKYASNFLWP 429
           YKR  +K S     +   ++V+      ++I + ++I    H I  V ++F +    LW 
Sbjct: 417 YKRDSSKPSKPSHHVARRNVVQNSSFLFDLISLFNVIPPSLHIIMGVAQRFAFDYLILWA 476

Query: 430 FKLNNPT 450
            +L+NP+
Sbjct: 477 ARLDNPS 483


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 533 PEKIVDLVSRLPKSPPST**MVFLRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMR-SST 357
           P+  + +    P SP +   +VFL    +   +   HR   +Y +F PT   S++R +S 
Sbjct: 89  PKHCISVKLSYPLSPTNILSIVFLSPYSLNYLSFSAHRSTFSYCSF-PTGHRSFVRPASA 147

Query: 356 QIMLCL 339
            I+L L
Sbjct: 148 NILLPL 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,938
Number of Sequences: 27780
Number of extensions: 318034
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)