Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30879
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 489 PVDIMNGLLAPTTSWIVQFEG 427
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 489 PVDIMNGLLAPTTSWIVQFEG 427
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 470 VFLRQPPVGLFNLKG 426
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 334 ASSQQCCWK*LVYVVHSAWRI 272
           A++   CW  + Y+V  AW I
Sbjct: 65  AAAVMSCWMNVYYIVILAWAI 85


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 81  RIRGINQVSPKSVKFCNCLDC 143
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 317 LLEVIGIRCPLSLAN 273
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 77  HPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 217
           H   W Q  F  ++ +  +      N G+  RL   T  + RI + Y
Sbjct: 2   HHRMWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGY 48


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 200 RIAEPYIAWGYPNLKSVRG 256
           R+ +PY  W + N K   G
Sbjct: 106 RLLQPYPDWSWANYKDCSG 124


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 457 NHQLDCSI*RATGNYS 410
           N+  DC+I  +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 479 MSTGETLVTARQDQRSSQEDG 541
           M+TG T +  R+ ++  Q DG
Sbjct: 254 MTTGTTTIPTRRLRKRRQNDG 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,966
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)