Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30877
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    29   0.050
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    24   1.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +2

Query: 281 RHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 460
           +H+Q Q++  ++ +   +   P+    +P PV+ +   +  S  S+P      H  +   
Sbjct: 130 QHNQQQSVEKSSKLKNKSA--PILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPN 187

Query: 461 YPKYEYNYSVADGHSGTTSPNKKSATVT 544
           Y K + + S       T+SP   SAT T
Sbjct: 188 YIKPQLHVST----GSTSSPTIASATYT 211


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 696 PGYSLDVCWGPAVGAVLWTTALKPLCASAVVLNGSDGSRSAS 571
           P   +  C+   +   +W+   K    +   +NGSD SR AS
Sbjct: 197 PASIIATCYAIII-ITIWSKNAKGFIKNTKAVNGSDNSRRAS 237


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -3

Query: 222 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 133
           T Q  +    G   + Q PQ H  H   +H
Sbjct: 158 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -3

Query: 222 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 133
           T Q  +    G   + Q PQ H  H   +H
Sbjct: 160 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,411
Number of Sequences: 336
Number of extensions: 2786
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)