Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30877
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    31   0.17 
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    28   1.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   4.7  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   4.7  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   4.7  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   8.2  

>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/91 (24%), Positives = 36/91 (39%)
 Frame = +2

Query: 416 APVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEAERLPSE 595
           A V  ++  Q   ++ P Y  +  V D H G  SP      +      +  +EA  L ++
Sbjct: 16  AKVLHLLEGQVSNLSLPSYIKHLKVVDFHFGKVSPQITIQEIGDPDPQFYENEAFELANQ 75

Query: 596 PLSTTADAHNGFNAVVHNTAPTAGPQHTSRL 688
            L     + N  + V+ +  P A     SRL
Sbjct: 76  ELEGDQCSRNNVSPVLTDLPPYAAEHPFSRL 106


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 326 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYSVA 493
           K A ++  T    P P   ++AP+A   HS P         +++A ++ +P  E ++S  
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFSNH 178

Query: 494 DGHSGTTSPNKK 529
           +      SP +K
Sbjct: 179 NPKPNNGSPLQK 190


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 455 IAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEAERLPSEPLSTTAD 616
           + + K   N S+A G     S    SA V    G YSF+     PS+  S+ A+
Sbjct: 353 VDHDKMSLNDSIAVGSFNVQSIINSSAQVDPETGLYSFNIETSSPSQDTSSKAE 406


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/88 (23%), Positives = 33/88 (37%)
 Frame = +2

Query: 395 AAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHE 574
           ++ +YH+ P       + E I  P +   Y+         SP  K + V+   G YS   
Sbjct: 127 SSTTYHTTPTTASENKKIESITIPDHASVYNDLP-----LSPTVKHSFVSPVSGDYSDSP 181

Query: 575 AERLPSEPLSTTADAHNGFNAVVHNTAP 658
            E   S   S   ++ N   +  HN  P
Sbjct: 182 LEPSSSSSFSVPPESLNPTLSFQHNDVP 209


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 293 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 442
           PQT   ++P+  +A +TPV+  + P P T    P  ++   AP+    AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 138 RHGVRCSGRKLPQQMSSGLVPPGD 67
           R+ + CSGRKL +Q  +G    GD
Sbjct: 59  RNEITCSGRKLYRQKGTGHARVGD 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,289
Number of Sequences: 5004
Number of extensions: 40754
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)