Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30877
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 40 0.002
02_02_0256 - 8362374-8363003 34 0.099
11_06_0494 + 24316007-24316365,24317307-24317706 31 0.70
07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677... 30 1.6
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 30 2.1
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 2.8
01_06_1435 + 37351653-37351990,37352241-37352424 29 2.8
12_02_0441 + 19115990-19116478 29 4.9
02_05_0092 + 25749070-25750638 29 4.9
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 28 6.5
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 28 6.5
02_05_0174 - 26486955-26487728 28 6.5
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 28 6.5
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 28 6.5
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 8.6
04_03_0314 - 14238620-14240128 28 8.6
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +2
Query: 293 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKY 472
P T + AP+ L V H +T + P AV+ H P +AH+ + I++P
Sbjct: 919 PST-QHVAPMNNLLSRATVHQHTQSYALT--SDPVAVAVHHQPAVNKLAHEVQSISHPAV 975
Query: 473 EYNYSVADGHSGTTSPNKKSATVT 544
++ SVA+ H+ TS +S+ T
Sbjct: 976 SHS-SVAESHASYTSYTWQSSVAT 998
>02_02_0256 - 8362374-8363003
Length = 209
Score = 34.3 bits (75), Expect = 0.099
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 275 IIRHDQPQTI-NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP--VAKIVAHQ 445
++R DQ T+ AAP A + V P P P+ H PAA SAP VA VA
Sbjct: 58 MVRDDQEPTVARPAAPSAVVVVVAP----PLPPPLPIHRVPAAAVQPSAPPVVADDVALL 113
Query: 446 AEEIAYPKYEYNYSVADGHSG 508
A AY K + +DG SG
Sbjct: 114 A--YAYEKKKKKRRGSDGDSG 132
>11_06_0494 + 24316007-24316365,24317307-24317706
Length = 252
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 527 SCWDLLCRSDRQLLSSCTRI*GRQSPRLDE 438
SCWDL D QLL+ C RI + P +E
Sbjct: 212 SCWDLCVDDDAQLLAKCARIRTLKLPPSEE 241
>07_03_0465 +
18465966-18466206,18467424-18467443,18467444-18467729,
18468557-18468666,18468744-18468909,18469303-18469433
Length = 317
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 410 HSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPN 523
H + KI + E+I YP+ +Y ++ + GTT P+
Sbjct: 250 HRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPH 287
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -3
Query: 246 NSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPPGD 67
+SG+ +LQG GKPQ QRG+ + H G R G + P ++ S PP
Sbjct: 274 HSGVASGYSLQG--GKPQQQRGEFGRLRFLPRHAGVARRRRRRGGRSPFRLVSPSHPP-P 330
Query: 66 QLWTPPQMRTVLL 28
T P M T+ L
Sbjct: 331 LSKTEPMMDTLEL 343
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 287 DQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS-APVAKIVAHQAEEIAY 463
DQP + AP + A P + PAP ++PA Y+S P A VA Q A
Sbjct: 59 DQPPSAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAE 118
Query: 464 P 466
P
Sbjct: 119 P 119
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 255 WQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGR 112
W N G ++ +G GKP+G+ + P +EHR F G+ GR
Sbjct: 81 WDDNDGNDR----RGGGGKPRGEERRRGVPWSEDEHRLFLEGLDRYGR 124
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +2
Query: 272 NIIRHDQPQTINYAAPVAKLAV---ATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 427
N+ D + Y P+ V +H P PV Y A SY+ APVA
Sbjct: 40 NVCLRDLAGVLGYRCPLCNFTVHRQGCRRPHHHHPPPVAYTQHQRASSYNQAPVA 94
>02_05_0092 + 25749070-25750638
Length = 522
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 284 HDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYH 385
H +P ++ AAP+ V P T APAPV H
Sbjct: 379 HQEPAMVDTAAPMDIHNVQEPDTAAPAPAPVVEH 412
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 234 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 133
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 282 RMMFWEETDWQTNSGLEQHGTLQGQHGKPQGQRGKLQE 169
R+ + +W N + HG +QGQ +P+ K +E
Sbjct: 389 RVAYGVNRNWNQNLNIGGHGRVQGQRNQPRNDGEKEEE 426
>02_05_0174 - 26486955-26487728
Length = 257
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = +2
Query: 311 AAPVAKLAVATPVTYHAAPAPV--------TYHAA---PAAVSYHSAPVAKIVAHQAEEI 457
AAP LA A PVT AP P ++ AA PA +HS P+ +VA A
Sbjct: 6 AAPALSLAEAAPVTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAA 65
Query: 458 A 460
A
Sbjct: 66 A 66
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -3
Query: 240 GLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPPGDQL 61
G+EQH QG+ G QG+R ++P++H H + R P+ + VP +
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPHVDQLAPLADGSRSTPESRVADPVPITETS 478
Query: 60 WTPPQMRTVLLIWKT 16
+ ++ L W T
Sbjct: 479 PRHSRRASLSLKWTT 493
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 28.3 bits (60), Expect = 6.5
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Frame = +2
Query: 368 APVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ 547
AP T AAPAA + +AP A V + E A P S + P+ S
Sbjct: 359 APATAEAAPAAATATAAPPAAPVEETSTEAA-PAEPTPLSPYTNYPDLKPPSSPSPLAPA 417
Query: 548 *RGSYSFHEAERLPSEPLSTTADAHNGFN-AVVHNTAPTAGPQHTSRL*PGPPNY 709
EA + SE S ++ N A V AP A P R PNY
Sbjct: 418 --------EATKNESESESAATESAPAVNSAPVAEAAPEAAPPAAPRPLSPYPNY 464
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 308 YAAPVAKLAVATPVTYHA-APAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 460
Y APV+ ++ PV + AP PV+Y++ P+ + A+ + A ++
Sbjct: 580 YYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMAATGEAAEPSGYYAASVS 631
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 317 PVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 436
P + A TP PAP +A +A S S P K+V
Sbjct: 30 PPSTAAPPTPTAVRCTPAPAAAPSAASAASARSIPPPKLV 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,544
Number of Sequences: 37544
Number of extensions: 324755
Number of successful extensions: 1233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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