Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30877
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 34 0.13
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 34 0.13
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1) 30 2.2
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 29 3.8
SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 29 3.8
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 29 3.8
SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 29 3.8
SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 29 3.8
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 29 3.8
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 3.8
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 29 3.8
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 29 3.8
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 29 3.8
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 29 3.8
SB_4973| Best HMM Match : RVT_1 (HMM E-Value=8.6e-11) 29 3.8
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 29 5.0
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014) 29 5.0
SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7) 28 6.6
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 8.8
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 28 8.8
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 254 QSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAP-APVTYHAAPAA-VSYHSAPVA 427
QS S + R +++ A A A PVT AAP APVT AAPAA V+ +AP A
Sbjct: 15 QSKSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAA 74
Query: 428 KI 433
++
Sbjct: 75 RV 76
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 427
AAP A++ A VT AAPA PVT AAPA H A
Sbjct: 90 AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 130
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 254 QSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAP-APVTYHAAPAA-VSYHSAPVA 427
QS S + R +++ A A A PVT AAP APVT AAPAA V+ +AP A
Sbjct: 172 QSKSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAA 231
Query: 428 KI 433
++
Sbjct: 232 RV 233
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 427
AAP A++ A VT AAPA PVT AAPA H A
Sbjct: 247 AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 287
>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
Length = 159
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 260 VSSQNIIRHDQPQTINYAA-PVAKLAVATP--VTYHAAPAPVTYHAAPAAVSYHSAPVAK 430
V+ ++ + P + Y P TP VTY+ P VTY V+Y P A
Sbjct: 35 VTPYHVTYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHVTYSVTLYHVTYCVTPYAT 94
Query: 431 IVAHQAEEI 457
H+ +EI
Sbjct: 95 AATHKKKEI 103
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 29.5 bits (63), Expect = 2.9
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Frame = +2
Query: 308 YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYS 487
Y A A P T + A APV AAPA +P A AYP
Sbjct: 1329 YPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPTA---APATAYPAQAPANP 1385
Query: 488 VADGHSGTTSP-NKKSATVTQ*RGSYSFHEAERLPSEPLSTTADAHNG-FNAVVHNTAPT 661
A T +P N +A V Q G + + ++P+ AH G APT
Sbjct: 1386 TAGTAYPTQAPFNTTAAPVYQTAGQPAQSNPTQ-SAQPMGNFFAAHQGQAYLAATGAAPT 1444
Query: 662 AG 667
AG
Sbjct: 1445 AG 1446
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 119 FHLARRIPKDTWKTVTDAWNGYHSV 143
>SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 909
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 427 FHLARRIPKDTWKTVTDAWNGYHSV 451
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 653 FHLARRIPKDTWKTVTDAWNGYHSV 677
>SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 817
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 471 FHLARRIPKDTWKTVTDAWNGYHSV 495
>SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 795
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 508 FHLARRIPKDTWKTVTDAWNGYHSV 532
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 772 FHLARRIPKDTWKTVTDAWNGYHSV 796
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 291 FHLARRIPKDTWKTVTDAWNGYHSV 315
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 513 FHLARRIPKDTWKTVTDAWNGYHSV 537
>SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 452
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 221 FHLARRIPKDTWKTVTDAWNGYHSV 245
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 141 FHLARRIPKDTWKTVTDAWNGYHSV 165
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 601 FHLARRIPKDTWKTVTDAWNGYHSV 625
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 119 FHLARRIPKDTWKTVTDAWNGYHSV 143
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 675 FHLARRIPKDTWKTVTDAWNGYHSV 699
>SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 436
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 273 FHLARRIPKDTWKTVTDAWNGYHSV 297
>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
Length = 776
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 493 FHLARRIPKDTWKTVTDAWNGYHSV 517
>SB_4973| Best HMM Match : RVT_1 (HMM E-Value=8.6e-11)
Length = 296
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 65 FHLARRIPKDTWKTVTDAWNGYHSV 89
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 252 QTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 169
QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 754 QTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 782
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 658 FHLARRVPKDTWKTVTDAWNGYHSV 682
>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
Length = 178
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 252 QTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 169
QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 84 QTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 112
>SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +2
Query: 329 LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSG 508
+A+ P T ++ P P T A + P A+ +AEE+ N ++GH+
Sbjct: 233 IALMLPETLYS-PMPQTVEQAETWAEDYKLPCARFHQRKAEEVIIDDEFPNEKTSNGHND 291
Query: 509 TTSPNKKSAT 538
++ N T
Sbjct: 292 SSDENTVGMT 301
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 566 FHEAERLPSEPLSTTADAHNGFNAV 640
FH A R+P + T DA NG+++V
Sbjct: 640 FHLARRVPMDTWKTVTDAWNGYHSV 664
>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
Length = 293
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 293 PQTINYAAPVAKLAVATP---VTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAY 463
P I P + + V P + YHAA HA ++H+A K+ A I Y
Sbjct: 168 PSLITVTLPPSNITVTLPPSFINYHAATTQYDRHATTKLYNHHAA--TKLYNRHAATILY 225
Query: 464 PKY 472
++
Sbjct: 226 NRH 228
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -3
Query: 237 LEQHGTLQGQHG-----KPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPP 73
+ G Q +HG K QG G+ Q +E RH ++ S ++MS P
Sbjct: 640 ISSQGMQQSEHGIFGSRKRQGNGGQPSSDQLPSEINIARHAIKISEESEKRKMSEERGPS 699
Query: 72 GDQL 61
GD L
Sbjct: 700 GDGL 703
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 645 WTTALKPLCASAVVLNGSDGSRSASWKE 562
W+ KP C+S V+ N S +R +W E
Sbjct: 550 WSERFKPTCSSEVMGNASATTRLRTWLE 577
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,233
Number of Sequences: 59808
Number of extensions: 333087
Number of successful extensions: 1126
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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