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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30877
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    31   1.1  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    30   1.4  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    29   2.5  
CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    29   3.3  
U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    29   4.4  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   4.4  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    28   7.7  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    28   7.7  
AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative RNA-...    28   7.7  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   7.7  

>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 248 VCQSVSSQNIIRHDQPQTINY--AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHS 415
           +C +V  Q+ +  +  +T     + P A  + A P   T   APA VT  AAPAAV+  +
Sbjct: 169 ICNAVKLQDFVNANCRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTA 228

Query: 416 APVAKIVAHQA 448
           A     VA  A
Sbjct: 229 AVTTTTVAAAA 239


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 248 VCQSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPV--TYHAAPAAVSYHSAP 421
           +C +V+ Q+ +  +  +T     P    A A  VT  AAPAPV     AAP AV   +AP
Sbjct: 170 ICNAVNWQDFVNKNCQKTCK-RCPATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAP 228


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 2/135 (1%)
 Frame = +2

Query: 305 NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNY 484
           NY +     + ++  T    P PV  +    + SYH+   +   A Q + IA P  + N 
Sbjct: 596 NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERSSTTTAQQPQTIALPPPQNNS 654

Query: 485 SVADGHSGTTSPNKKSATVTQ*RGSYSFHEAERLPSEPLSTTADAHNG--FNAVVHNTAP 658
           S  + HS +T P    +       S  F  +     E  +TT        F    + T  
Sbjct: 655 SHTETHS-STGPIMMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTK 713

Query: 659 TAGPQHTSRL*PGPP 703
           T    ++S   P  P
Sbjct: 714 TTSYNYSSSTIPSQP 728


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +2

Query: 260 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 421
           V+  +I +  QP    Y APVA +A          PAP+  H AP   ++      H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416

Query: 422 VAKIVAHQ 445
             K+VA +
Sbjct: 417 ETKVVAEE 424


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +2

Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ--AEEI--AYP 466
           T N A+ VA+ AV TP     APAP        A S   AP     A +  A E   A P
Sbjct: 250 TANAASAVAEPAVETP-----APAPAAEETPAPATSSEEAPAPAPTAEETPAPETVSAAP 304

Query: 467 KYEYNYSVADGHSGTT-SPNKKSA 535
           +   +Y  A G + T  +P+ ++A
Sbjct: 305 EAANSYDSAGGDAATAPAPSSEAA 328


>CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical
           protein C50E10.4 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +2

Query: 314 APVAKLAVATPVTYHAAP----APVTYHAAPAAVSYHSAPVAKIVAHQAEEIA--YPKYE 475
           AP A++A  TPV    AP    AP T  AAPAA    ++   ++    A +++      E
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMDTSIATEMPQESAVDLSNVSAATE 315

Query: 476 YNYSVADGHSGTTSPNKKSATVTQ 547
            + S     S  TS  KK    T+
Sbjct: 316 MDTSKEGEASRPTSEKKKKIRTTE 339


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487


>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
 Frame = +2

Query: 398 AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577
           + SYH+   +   A Q + IA P  + N S  + HS +T P    +       S  F  +
Sbjct: 292 STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 350

Query: 578 ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703
                E  +TT        F    + T  T    ++S   P  P
Sbjct: 351 RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 394


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
            isoform a protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
 Frame = +2

Query: 398  AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577
            + SYH+   +   A Q + IA P  + N S  + HS +T P    +       S  F  +
Sbjct: 876  STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 934

Query: 578  ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703
                 E  +TT        F    + T  T    ++S   P  P
Sbjct: 935  RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 978


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 213 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 124
           G HG P       + P RH  H    HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +2

Query: 314 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 460
           APV   A A    Y  APAPV   A   A +Y  APVA  +   A  +A
Sbjct: 83  APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 287 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 457
           DQ ++IN A P A     A   P T  A P  +    + AA         ++V+HQA   
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414

Query: 458 AYP 466
            YP
Sbjct: 415 GYP 417


>AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative
           RNA-binding protein PRP-1 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,874
Number of Sequences: 27780
Number of extensions: 246952
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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