Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30877
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 31 0.83
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 31 1.1
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 1.4
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 2.5
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.3
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 3.3
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 29 4.4
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 4.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 4.4
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 7.7
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 28 7.7
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 28 7.7
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 28 7.7
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 32.3 bits (70), Expect = 0.36
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 248 VCQSVSSQNIIRHDQPQTINY--AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHS 415
+C +V Q+ + + +T + P A + A P T APA VT AAPAAV+ +
Sbjct: 169 ICNAVKLQDFVNANCRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTA 228
Query: 416 APVAKIVAHQA 448
A VA A
Sbjct: 229 AVTTTTVAAAA 239
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 31.1 bits (67), Expect = 0.83
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 248 VCQSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPV--TYHAAPAAVSYHSAP 421
+C +V+ Q+ + + +T P A A VT AAPAPV AAP AV +AP
Sbjct: 170 ICNAVNWQDFVNKNCQKTCK-RCPATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAP 228
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 2/135 (1%)
Frame = +2
Query: 305 NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNY 484
NY + + ++ T P PV + + SYH+ + A Q + IA P + N
Sbjct: 596 NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERSSTTTAQQPQTIALPPPQNNS 654
Query: 485 SVADGHSGTTSPNKKSATVTQ*RGSYSFHEAERLPSEPLSTTADAHNG--FNAVVHNTAP 658
S + HS +T P + S F + E +TT F + T
Sbjct: 655 SHTETHS-STGPIMMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTK 713
Query: 659 TAGPQHTSRL*PGPP 703
T ++S P P
Sbjct: 714 TTSYNYSSSTIPSQP 728
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 260 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 421
V+ +I + QP Y APVA +A PAP+ H AP ++ H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416
Query: 422 VAKIVAHQ 445
K+VA +
Sbjct: 417 ETKVVAEE 424
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 2.5
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ--AEEI--AYP 466
T N A+ VA+ AV TP APAP A S AP A + A E A P
Sbjct: 250 TANAASAVAEPAVETP-----APAPAAEETPAPATSSEEAPAPAPTAEETPAPETVSAAP 304
Query: 467 KYEYNYSVADGHSGTT-SPNKKSA 535
+ +Y A G + T +P+ ++A
Sbjct: 305 EAANSYDSAGGDAATAPAPSSEAA 328
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +2
Query: 314 APVAKLAVATPVTYHAAP----APVTYHAAPAAVSYHSAPVAKIVAHQAEEIA--YPKYE 475
AP A++A TPV AP AP T AAPAA ++ ++ A +++ E
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMDTSIATEMPQESAVDLSNVSAATE 315
Query: 476 YNYSVADGHSGTTSPNKKSATVTQ 547
+ S S TS KK T+
Sbjct: 316 MDTSKEGEASRPTSEKKKKIRTTE 339
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 398 AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577
+ SYH+ + A Q + IA P + N S + HS +T P + S F +
Sbjct: 292 STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 350
Query: 578 ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703
E +TT F + T T ++S P P
Sbjct: 351 RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 394
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 398 AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577
+ SYH+ + A Q + IA P + N S + HS +T P + S F +
Sbjct: 876 STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 934
Query: 578 ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703
E +TT F + T T ++S P P
Sbjct: 935 RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 978
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 213 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 124
G HG P + P RH H HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +2
Query: 314 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 460
APV A A Y APAPV A A +Y APVA + A +A
Sbjct: 83 APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 287 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 457
DQ ++IN A P A A P T A P + + AA ++V+HQA
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414
Query: 458 AYP 466
YP
Sbjct: 415 GYP 417
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,874
Number of Sequences: 27780
Number of extensions: 246952
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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