BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30877 (719 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 32 0.36 Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 31 0.83 U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 31 1.1 U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 1.4 U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 2.5 CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.3 AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 3.3 U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 29 4.4 U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 4.4 AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 4.4 Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 7.7 U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 28 7.7 AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 28 7.7 AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 28 7.7 >Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical protein F35E8.7 protein. Length = 288 Score = 32.3 bits (70), Expect = 0.36 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +2 Query: 248 VCQSVSSQNIIRHDQPQTINY--AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHS 415 +C +V Q+ + + +T + P A + A P T APA VT AAPAAV+ + Sbjct: 169 ICNAVKLQDFVNANCRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTA 228 Query: 416 APVAKIVAHQA 448 A VA A Sbjct: 229 AVTTTTVAAAA 239 >Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical protein F35E8.6 protein. Length = 272 Score = 31.1 bits (67), Expect = 0.83 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = +2 Query: 248 VCQSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPV--TYHAAPAAVSYHSAP 421 +C +V+ Q+ + + +T P A A VT AAPAPV AAP AV +AP Sbjct: 170 ICNAVNWQDFVNKNCQKTCK-RCPATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAP 228 >U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform c protein. Length = 925 Score = 30.7 bits (66), Expect = 1.1 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 2/135 (1%) Frame = +2 Query: 305 NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNY 484 NY + + ++ T P PV + + SYH+ + A Q + IA P + N Sbjct: 596 NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERSSTTTAQQPQTIALPPPQNNS 654 Query: 485 SVADGHSGTTSPNKKSATVTQ*RGSYSFHEAERLPSEPLSTTADAHNG--FNAVVHNTAP 658 S + HS +T P + S F + E +TT F + T Sbjct: 655 SHTETHS-STGPIMMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTK 713 Query: 659 TAGPQHTSRL*PGPP 703 T ++S P P Sbjct: 714 TTSYNYSSSTIPSQP 728 >U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical protein ZK180.6 protein. Length = 701 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = +2 Query: 260 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 421 V+ +I + QP Y APVA +A PAP+ H AP ++ H AP Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416 Query: 422 VAKIVAHQ 445 K+VA + Sbjct: 417 ETKVVAEE 424 >U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical protein ZK84.1 protein. Length = 801 Score = 29.5 bits (63), Expect = 2.5 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +2 Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ--AEEI--AYP 466 T N A+ VA+ AV TP APAP A S AP A + A E A P Sbjct: 250 TANAASAVAEPAVETP-----APAPAAEETPAPATSSEEAPAPAPTAEETPAPETVSAAP 304 Query: 467 KYEYNYSVADGHSGTT-SPNKKSA 535 + +Y A G + T +P+ ++A Sbjct: 305 EAANSYDSAGGDAATAPAPSSEAA 328 >CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical protein C50E10.4 protein. Length = 735 Score = 29.1 bits (62), Expect = 3.3 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Frame = +2 Query: 314 APVAKLAVATPVTYHAAP----APVTYHAAPAAVSYHSAPVAKIVAHQAEEIA--YPKYE 475 AP A++A TPV AP AP T AAPAA ++ ++ A +++ E Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMDTSIATEMPQESAVDLSNVSAATE 315 Query: 476 YNYSVADGHSGTTSPNKKSATVTQ 547 + S S TS KK T+ Sbjct: 316 MDTSKEGEASRPTSEKKKKIRTTE 339 >AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical protein K08D12.6 protein. Length = 668 Score = 29.1 bits (62), Expect = 3.3 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +2 Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463 APV + VA P AA PAP AAPAA + +AP A ++++ AY Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159 Score = 29.1 bits (62), Expect = 3.3 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +2 Query: 314 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 463 APV + VA P AA PAP AAPAA + +AP A ++++ AY Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487 >U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform b protein. Length = 591 Score = 28.7 bits (61), Expect = 4.4 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%) Frame = +2 Query: 398 AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577 + SYH+ + A Q + IA P + N S + HS +T P + S F + Sbjct: 292 STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 350 Query: 578 ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703 E +TT F + T T ++S P P Sbjct: 351 RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 394 >U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform a protein. Length = 1175 Score = 28.7 bits (61), Expect = 4.4 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 2/104 (1%) Frame = +2 Query: 398 AVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPNKKSATVTQ*RGSYSFHEA 577 + SYH+ + A Q + IA P + N S + HS +T P + S F + Sbjct: 876 STSYHTERSSTTTAQQPQTIALPPPQNNSSHTETHS-STGPIMMHSPGGHSMKSTEFSSS 934 Query: 578 ERLPSEPLSTTADAHNG--FNAVVHNTAPTAGPQHTSRL*PGPP 703 E +TT F + T T ++S P P Sbjct: 935 RHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTIPSQP 978 >AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical protein W03G1.5 protein. Length = 471 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/30 (36%), Positives = 12/30 (40%) Frame = -3 Query: 213 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 124 G HG P + P RH H HG R Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424 >Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical protein T06E4.10 protein. Length = 180 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = +2 Query: 314 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 460 APV A A Y APAPV A A +Y APVA + A +A Sbjct: 83 APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129 >U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated protein 11, isoform d protein. Length = 534 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Frame = +2 Query: 287 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 457 DQ ++IN A P A A P T A P + + AA ++V+HQA Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414 Query: 458 AYP 466 YP Sbjct: 415 GYP 417 >AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-binding protein PRP-1 protein. Length = 390 Score = 27.9 bits (59), Expect = 7.7 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469 T+ P + +V V +APAP+++ AA AA ++ + K A + A P+ Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251 >AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 59 protein. Length = 712 Score = 27.9 bits (59), Expect = 7.7 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 299 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 469 T+ P + +V V +APAP+++ AA AA ++ + K A + A P+ Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,558,874 Number of Sequences: 27780 Number of extensions: 246952 Number of successful extensions: 873 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 798 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 867 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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