Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30877
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 245 FVCQSVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS 415
           +V + V+ ++ I       I  A  V K  +   V       P+T   +PAAVSY S
Sbjct: 62  YVNKGVTYKHTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPLTGDLSPAAVSYTS 118


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 84  LVPPGDQLWTPP 49
           + P GD LW PP
Sbjct: 133 IYPNGDVLWVPP 144


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 273 FWEETDWQTNSGLEQHGTLQ 214
           FWE    Q + G+E  G+++
Sbjct: 187 FWERRTLQISDGIENIGSIR 206


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 273 FWEETDWQTNSGLEQHGTLQ 214
           FWE    Q + G+E  G+++
Sbjct: 240 FWERRTLQISDGIENIGSIR 259


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 71  PGGTSPLLICWGSFLPE 121
           P    P++  WG F+PE
Sbjct: 175 PWALMPVMGVWGRFVPE 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,843
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)