Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30877
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.44
At3g12410.1 68416.m01546 hypothetical protein 29 2.3
At2g34330.1 68415.m04202 expressed protein 29 4.1
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 29 4.1
At4g17640.1 68417.m02637 casein kinase II beta chain, putative s... 28 5.4
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 5.4
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 5.4
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 5.4
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 5.4
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 5.4
At5g47080.1 68418.m05802 casein kinase II beta chain, putative s... 27 9.5
At2g44680.1 68415.m05560 casein kinase II beta chain, putative s... 27 9.5
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 27 9.5
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 311 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 421
+AP + PV +H+ P P+ +H+ P V + S P
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPPVIHQSPP 733
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 314 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 436
APV + P+ +H+ P PV + + P + P+ ++
Sbjct: 707 APVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVI 747
>At3g12410.1 68416.m01546 hypothetical protein
Length = 230
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 341 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 436
TP +Y++ P P Y+A P + Y+S A I+
Sbjct: 65 TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96
>At2g34330.1 68415.m04202 expressed protein
Length = 143
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 189 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPP 73
++ K ++ +R NE R F H V +K P+Q SS V P
Sbjct: 68 KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 28.7 bits (61), Expect = 4.1
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Frame = +2
Query: 269 QNIIRHDQPQTIN---YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 439
+N + HD ++ + V ++ V T T APAPVT SY +PV++ +
Sbjct: 123 RNSVTHDTSHVLDSFLWDVDVVEILVGT-TTPAPAPAPVTTPPPHRRPSYTYSPVSRTSS 181
Query: 440 HQAEE---IAYPKYE---YNYSVAD--GH 502
++EE + PK E Y +AD GH
Sbjct: 182 EKSEEELTVPPPKSEGRPIYYHIADEEGH 210
>At4g17640.1 68417.m02637 casein kinase II beta chain, putative
similar to casein kinase II beta' chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40229
Length = 282
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 416 APVAKIVAHQAEEIAYPKYEYNYSVADGHSGTTSPN 523
A KI + E++ YP+ +Y ++ + GTT P+
Sbjct: 217 ASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPH 252
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 341 TPVTYHAAPAPVTYHAAPAAVSYHS 415
+PV+YH+ +PVT+H V Y S
Sbjct: 73 SPVSYHSDSSPVTHHYDSPPVCYRS 97
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 46 LWRCPKLVSWRNQSTTHLLGQFPPR 120
L +C LV W + +T HL G+ PPR
Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 278 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 430
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 278 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 430
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1531
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 231 QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 145
Q+G Q Q+G+ Q Q G+LQ EP R E++
Sbjct: 926 QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955
>At5g47080.1 68418.m05802 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 287
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 428 KIVAHQAEEIAYPKYEYNYSVADGHSGTTSPN 523
KI + E+I YP+ +Y ++ + GTT P+
Sbjct: 226 KIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPH 257
>At2g44680.1 68415.m05560 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 283
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 428 KIVAHQAEEIAYPKYEYNYSVADGHSGTTSPN 523
KI + E+I YP+ +Y ++ + GTT P+
Sbjct: 221 KIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPH 252
>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 234 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 130
E H L QG +G+L PQ + RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290
>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 624
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 404 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 487
SY +AP +V+H A +IA+ + Y YS
Sbjct: 78 SYTTAPARNVVSHHA-QIAWRRLHYKYS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,173
Number of Sequences: 28952
Number of extensions: 231682
Number of successful extensions: 959
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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