Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30876
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.23
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 29 0.69
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 27 2.1
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 27 2.8
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 27 3.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.7
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 4.9
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 4.9
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 4.9
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 8.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.5
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 8.5
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 8.5
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 28 DYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 144
D ++ G+DPP + Y PP T +++ S +N+
Sbjct: 158 DLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANF 196
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 40 RFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 144
R GV PP + Y PP S T + T G N+
Sbjct: 576 RLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNF 610
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 515 QALNGDSLKIYVKTDAVTNRIGYNNTNLLH 426
Q +N DS++IY D +TN+I +H
Sbjct: 30 QVINADSMQIYRGFDTITNKITVEEQENVH 59
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 362 VGVDGDIPSGLTACEIHAPAPRRRSLA*SIHFL 264
+G+DG+I +HAP+ RR +L ++ +L
Sbjct: 220 LGIDGEIKLSDFGWSVHAPSNRRTTLCGTLDYL 252
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 90 CWWCIGNRSR--WRIHTKSLLIIVIVNG 13
CW R + WR HTK++L + IV G
Sbjct: 39 CWCLTSMRPKCAWRAHTKTILGMQIVKG 66
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 295 RRGAGACISHAVKPLGISPSTPTNLTTVTSLGSLEF 402
RRG SH+VK + +P NL + + GS+ F
Sbjct: 220 RRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIF 255
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 36 AKIWCGSSIDSCCLCTTSMVYNA 104
A++ CGS+I++C T V NA
Sbjct: 163 ARLACGSAIETCTAVVTGQVKNA 185
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 4.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 136 CRCWWLIVRSP 104
C CWWLI+ +P
Sbjct: 278 CSCWWLILSTP 288
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 428 VVNLYYYILFCLLPRLFSHK 487
++ YYY+L CL P F K
Sbjct: 66 IIYYYYYLLICLSPHFFPIK 85
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 210 AANNTITLKLVSSSELLNQKVN 275
AA N I+LKL+ E L +KVN
Sbjct: 108 AAGNVISLKLIMEDEKLIEKVN 129
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 40 RFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 144
R G+ PP + Y PP T + S G N+
Sbjct: 160 RVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNF 194
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 572 YCDELRKEYN*KVTLFEV*QALNGDSLKIYVKTDAVTNRIGYNNTNLL 429
+C E+ KE + F+ +++ S K+Y + NR+ +NN+ +
Sbjct: 1250 FCLEMLKEVKELGSTFK---SISSTSFKVYSQLTIFANRVSFNNSTAI 1294
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 376 VTSLGSLEFAVPK-TALQCSKFVLLYPILFVTASVFT*IFNE 498
V L SL+ AV T L SKF L + +L + + V T FNE
Sbjct: 1249 VDFLSSLQLAVESLTDLLISKFKLNHLVLELWSDVLTYAFNE 1290
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 435 FTTLQCRLGDSKLQRTQRRHSSEICRCRW*YSERLDSV*DTRTGAASPLTGLEHSLSD 262
F T+ CR+ D ++Q H +E+C R D + L L SL D
Sbjct: 179 FETVLCRVCDHEIQNWYFEHHTELCLLIHHAEARAQEANDLLNEQRNALQSLLDSLDD 236
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 367 LTTVTSLGSLEFAVPKTALQCSKFVLLYPILFVTASVFT*IFNESPFR 510
L +TS+GS AVP A SK + LYP + F F+ S F+
Sbjct: 292 LIMMTSIGSNASAVPVHAYLASKRI-LYPSIIPEEIFFMRKFDSSLFK 338
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 287 VSGDAAPVRVSHTLSSRSE 343
VSGD PV+V +T S +SE
Sbjct: 228 VSGDPTPVKVLNTTSPKSE 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,737
Number of Sequences: 5004
Number of extensions: 53971
Number of successful extensions: 174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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