Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30876
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1207 - 9710830-9711291                                           31   0.95 
08_01_0914 + 9010613-9013316,9013537-9013748                           29   2.9  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    29   2.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   2.9  
12_01_0731 - 6516894-6517473,6517485-6519574                           29   3.9  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    28   8.9  
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    28   8.9  

>01_01_1207 - 9710830-9711291
          Length = 153

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -1

Query: 476 TDAVTNRIGYNNTNLLHCNAVLGTANSSEPSDVTVVRFVGVDGDIPSGLTACEIHAPAPR 297
           T   T+ +GY    L    A +    +S   D  VV   GV+G++P  + A E  A A R
Sbjct: 71  TTTTTSVVGYRRALLPREAAAVVMPTTSTAEDAAVVGMAGVEGELP--VVADEAAAAAAR 128

Query: 296 RRSL 285
           R  +
Sbjct: 129 RMDM 132


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 467 PRLFSHKFSMNHRSGLVRPQIM*LFNCTLFLIHHNNV 577
           P+L S  FS NH SG +   +  L    +F I HNN+
Sbjct: 130 PKLRSLNFSRNHLSGTIPADLGKLSKLAVFDIGHNNL 166


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 286 SERRRGAGACISHAVKPLGISPSTPTNLTTVTSLGSLEFAVP 411
           S+R+R A A  +    P  +SP++ T+ T+ T+ GS + + P
Sbjct: 442 SDRKRNAAATAARNASPEHVSPTSVTSRTSGTNQGSNDCSPP 483


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 464 LPRLFSHKFSMNHRSGLVRPQIM*LFNCTLFLIHHNNVVSKP 589
           L +LF+   S+NH +G V  +I  L + + FLI  +N +S P
Sbjct: 452 LKKLFALDLSINHLNGSVPKEIFELPSLSWFLILSDNTLSGP 493


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 500 HRSGLVRPQIM*LFNCTLFLIHHNNVV 580
           H SG++ PQI+ L +    L+H NN+V
Sbjct: 441 HFSGVIAPQILNLTHLQYLLLHSNNLV 467


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 31  YEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVS 189
           +     V PP  P+   P + ST+     S +S   NY+LQ Y   +PY+  S
Sbjct: 294 FRSTVAVSPPR-PIRRHPSSQSTSRAY--SISSAPRNYNLQRYYTNSPYISTS 343


>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 443 NTNLLHCNAVLGTANSSEPSDVTVVRFVGVDGDIPSGLTACEIHAPA 303
           +T   H NA    A SS+   + V  FV  D   P  LT C +H PA
Sbjct: 25  HTGRCHDNATTARAKSSDGYPIEV-SFVFAD---PPALTRCFVHCPA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,963,708
Number of Sequences: 37544
Number of extensions: 350250
Number of successful extensions: 1359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)