Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30876
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_32447| Best HMM Match : PHD (HMM E-Value=0.017) 30 1.7
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 30 2.3
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 29 3.9
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 24 4.6
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 24 5.0
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35) 28 6.9
SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 37 QRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 144
QR G+ PP + Y PP S T + T +G N+
Sbjct: 564 QRLGIRPPRGILMYGPPGCSKTLIARALATESGLNF 599
>SB_32447| Best HMM Match : PHD (HMM E-Value=0.017)
Length = 443
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 36 AKIWCGSSIDSCCLCT 83
AK+W +DSCCLCT
Sbjct: 164 AKVWNALPLDSCCLCT 179
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 46 GVDPPSTPVAYAPPAWSTTPVIEQSTTS 129
G+ P STP A APP ST P+ S +S
Sbjct: 208 GIPPSSTPQARAPPHSSTQPLSSHSGSS 235
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 55 PPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEY 159
PP+ P APP +TTP TT NY QEY
Sbjct: 97 PPTPPATGAPPEVTTTPT-PPVTTQQADNY--QEY 128
>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 511
Score = 23.8 bits (49), Expect(2) = 4.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 114 FDHRRCRPCWWC 79
+D +CRPC+ C
Sbjct: 64 YDQEQCRPCYQC 75
Score = 23.4 bits (48), Expect(2) = 4.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 99 CRPCWWCIGN 70
C PC WC G+
Sbjct: 111 CEPCSWCCGD 120
>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 215
Score = 23.8 bits (49), Expect(2) = 5.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 114 FDHRRCRPCWWC 79
+D +CRPC+ C
Sbjct: 64 YDQEQCRPCYQC 75
Score = 23.4 bits (48), Expect(2) = 5.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 99 CRPCWWCIGN 70
C PC WC G+
Sbjct: 111 CEPCSWCCGD 120
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 52 DPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYP--WAAPYVDVSSDS 198
DP + + PP WST P EQ+ S++ + W Y SS+S
Sbjct: 2232 DPVDSLFSEVPPEWSTLPSPEQNAFGGDSSWASPDMSAIWGEQYSIPSSES 2282
>SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35)
Length = 311
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 80 HHQHGLQRR*SNNQPPATAATTIYKSIPGQRPTSMSPAIV 199
HH HGLQ+R + + A AATT+ ++ G S P I+
Sbjct: 63 HHFHGLQQRETRRRIEAHAATTVGLTV-GSYVLSCIPLIM 101
>SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 226 IVLLAATKTNYRWRHRRRALPRDTLVNGSCCRCWWLIVRSP 104
+ LL T HR +PR+ + +CC+ +W++V +P
Sbjct: 243 LALLVTCLTLLMTFHRELLVPRNMSI--ACCKAFWVLVMAP 281
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +1
Query: 7 SEAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDV 186
S+A+ D DY +D PST P W + ++ TT + + P V
Sbjct: 632 SDALPDSDYALEPRIDSPSTRDLNTPHIWPSPAIVTIPTTVTDTPSRTSD---VRPPAKV 688
Query: 187 SSDS*FL*PP 216
D +L PP
Sbjct: 689 RVDPDYLLPP 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,001,707
Number of Sequences: 59808
Number of extensions: 406378
Number of successful extensions: 1153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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