Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30876
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    29   4.5  
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    29   4.5  
M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein ( C.ele...    28   6.0  
M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein ( C.ele...    28   6.0  
L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated p...    28   6.0  
L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated p...    28   6.0  
Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    28   7.9  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 37  QRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 144
           +RFG+DPP+  + Y PP  S T +     +    N+
Sbjct: 486 ERFGIDPPAGILLYGPPGCSKTLIARALASEAKMNF 521


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 443 YYILFCLLPRLFSHKFSMNHRSGLVRPQIM*LFNCTLFLIH 565
           Y +   LLP++   +F ++HR GL+  ++   FNCT+  ++
Sbjct: 12  YVVRSTLLPKIVEVRF-LSHRIGLLTFKVSRKFNCTVIQVY 51


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  YDYEQRFGVDPPSTPVAYAPPAWSTT-PVIEQSTTSNGSNYHLQE 156
           Y  E+    + P+T + Y P    TT P +E++TT+ G    ++E
Sbjct: 324 YPSEKTTAENVPTTTIGYEPEVVETTAPYVEETTTTVGYKPEVEE 368



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 10  EAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVD 183
           E    Y  E     D PST   Y P    TT   E  TT+    Y  +      PYV+
Sbjct: 388 ETTAPYVEETTTAADVPSTTAVYEPEVVETTTEAEVPTTTT-VGYEPEVVETTVPYVE 444


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  YDYEQRFGVDPPSTPVAYAPPAWSTT-PVIEQSTTSNGSNYHLQE 156
           Y  E+    + P+T + Y P    TT P +E++TT+ G    ++E
Sbjct: 324 YPSEKTTAENVPTTTIGYEPEVVETTAPYVEETTTTVGYKPEVEE 368



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 10  EAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVD 183
           E    Y  E     D PST   Y P    TT   E  TT+    Y  +      PYV+
Sbjct: 388 ETTAPYVEETTTAADVPSTTAVYEPEVVETTTEAEVPTTTT-VGYEPEVVETTVPYVE 444


>M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 429

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 195
           APP +        STTS  S+ +L  YP A P  D+ +D
Sbjct: 193 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 231


>M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 467

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 195
           APP +        STTS  S+ +L  YP A P  D+ +D
Sbjct: 231 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 269


>L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated
           protein 86, isoform b protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 195
           APP +        STTS  S+ +L  YP A P  D+ +D
Sbjct: 231 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 269


>L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated
           protein 86, isoform a protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 195
           APP +        STTS  S+ +L  YP A P  D+ +D
Sbjct: 193 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 231


>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 122 PPAT-AATTIYKSIPGQRPTSMSPAIVSFCSRQ*HYHIKTS*LI*APKSESECSKPVSGD 298
           PPA+ + T+  +++   +P   +P+ +S        H K   L  A KS  EC KPVS +
Sbjct: 13  PPASFSETSKVQNVQNTQPKPAAPSQMSIDES----HSKNQKLPSAEKSVEECKKPVSPE 68

Query: 299 --AAPVRV 316
              +P++V
Sbjct: 69  KKKSPIKV 76


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 461 LLPRLFSHKFSMNHRSGLVRPQIM*LFNCTLFLIH 565
           LLP++   +F ++HR GL+  ++   FNCT+  ++
Sbjct: 189 LLPKIVEVRF-LSHRIGLLTFKVSRKFNCTVIQVY 222


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 49  VDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEY 159
           V+PP++  AY PP  ++      ST SN S Y    Y
Sbjct: 378 VNPPTSYQAYQPPVPTSYYPPAASTASNSSGYQAPYY 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,346
Number of Sequences: 27780
Number of extensions: 313260
Number of successful extensions: 1155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)