Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30876
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.42 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 63  DSCCLCTTSMVYNAGDRTINHQQRQQ 140
           DSCCLC  SM  NA  R  N  + ++
Sbjct: 353 DSCCLCLDSM--NAVIRNFNESENRR 376


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 1  VESEAVDDYDYEQRFGVDPP 60
          VES  + DYD E  F ++ P
Sbjct: 6  VESFEITDYDLENEFNINRP 25


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 55   PPSTPVAYAPPAWSTTPVIEQSTTSNG 135
            PPS PV Y   + S++ ++   +  NG
Sbjct: 1404 PPSAPVLYVTSSTSSSILLHWKSGHNG 1430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 55   PPSTPVAYAPPAWSTTPVIEQSTTSNG 135
            PPS PV Y   + S++ ++   +  NG
Sbjct: 1400 PPSAPVLYVTSSTSSSILLHWKSGHNG 1426


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 QKVNALSQ*AATRRRCVYLTRCQAARNITIDTYKSHY-CD 380
           +K N   +    +RR   L   +  RN  ID+YKS+  CD
Sbjct: 112 EKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCD 151


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 426 LQCRLGDSKLQRTQRRHSSEICRCR 352
           L C  GD   ++ ++R ++  CR R
Sbjct: 430 LYCLAGDESFRKRRQREAAGNCRKR 454


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 19  DDYDYEQRFGVDPPSTPVAYAPPAWS 96
           +D       G++   +PV  +PPA+S
Sbjct: 451 EDLSVSGEAGIEEVKSPVLRSPPAFS 476


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 19  DDYDYEQRFGVDPPSTPVAYAPPAWS 96
           +D       G++   +PV  +PPA+S
Sbjct: 451 EDLSVSGEAGIEEVKSPVLRSPPAFS 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,329
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)