Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30876
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    31   1.1  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At3g49750.1 68416.m05439 leucine-rich repeat family protein cont...    28   5.6  
At1g50640.1 68414.m05692 ethylene-responsive element-binding fac...    27   9.8  
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    27   9.8  

>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 211 ATKTNYRWRHRRRALPRDTLVNGSCCRCW 125
           A K   +W H ++ +P+D  +  SCC C+
Sbjct: 149 ALKLARKWGHEKKNIPKDEAIIVSCCGCF 177


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +1

Query: 25  YDYEQRFGVDPPST---PVAYAPPAWSTTPVIEQSTTSNGSNYHL-QEYPWAAP 174
           Y Y   + V  P     P    PP+ S  P  + S    G NYH  Q YP  AP
Sbjct: 41  YSYSHNYPVSTPQLSLPPPPAQPPSSSQPPPSQISYRPYGQNYHQNQYYPQQAP 94


>At3g49750.1 68416.m05439 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to resistance
           gene Hcr2-5B, Lycopersicon esculentum, EMBL:AF053997
          Length = 274

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 LFSHKFSMNHRSGLVRPQIM*LFNCTLFLIHHNNVVSKPRIYISLLLFVNTFTLHN 640
           L S   S N  SG++ P+I  L N  +  +  N++  +    ++L  ++N   LH+
Sbjct: 99  LQSLDLSSNQISGVIPPEIQYLVNLAVLNLSSNHLSGEITPQLALCAYLNVIDLHD 154


>At1g50640.1 68414.m05692 ethylene-responsive element-binding factor
           3 (ERF3) identical to SP|O80339 Ethylene responsive
           element binding factor 3 (AtERF3) [Arabidopsis thaliana]
          Length = 225

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 116 NQPPATAATTIYKSIPGQRPTSMSPA 193
           N+P +++ ++  +S  G RPT+M PA
Sbjct: 128 NRPTSSSMSSTVESFSGPRPTTMKPA 153


>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
           kinase, putative similar to many predicted protein
           kinases
          Length = 1120

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 464 LPRLFSHKFSMNHRSGLVRPQIM*LFNCTLFLIHHNNVVS 583
           L +L     S NH +G + P +  L N T+  +H N + S
Sbjct: 125 LSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTS 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,308
Number of Sequences: 28952
Number of extensions: 278847
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)