Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30875
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   130   3e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   124   1e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.12 
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    28   1.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   3.5  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    27   3.5  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   6.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   6.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  130 bits (313), Expect = 3e-31
 Identities = 71/112 (63%), Positives = 78/112 (69%)
 Frame = +2

Query: 248 CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 427
           CV ISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q 
Sbjct: 78  CV-ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQA 136

Query: 428 ITEASYVNIPVIALCNTDSPLRFVDIASHATPSLPTLLV*CGGCWAREVLRL 583
           I EAS+VNIPVIALC+TDS L  VD+A          +       AREVLRL
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRL 188



 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 39/68 (57%), Positives = 54/68 (79%)
 Frame = +3

Query: 48  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 227
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 228 AIENPADV 251
            IENPADV
Sbjct: 70  TIENPADV 77


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  124 bits (300), Expect = 1e-29
 Identities = 61/87 (70%), Positives = 69/87 (79%)
 Frame = +2

Query: 248 CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 427
           CV +S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q 
Sbjct: 77  CV-VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQA 135

Query: 428 ITEASYVNIPVIALCNTDSPLRFVDIA 508
           I EAS+VNIPVIALC+TDS L  VDIA
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIA 162



 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = +3

Query: 36  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 215
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 216 RAVVAIENPADV 251
           R +  IENPADV
Sbjct: 65  RVIATIENPADV 76



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDEQ 681
           P N K   SIGL+W+LL    V        R   WDV+ DL+    +PE +V+R+E+
Sbjct: 164 PTNNKGRKSIGLIWYLLAR-EVLRVRGTLSRSAPWDVMPDLYFYR-DPE-EVEREEE 217


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 383 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 499
           P L+++L+P ++     EA   ++P I + +TD+  R V
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMV 218


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -2

Query: 287 QHADRRAVMR*EHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVNIFC 108
           +H D   + +   I+G++  YD+     +F   + +V +     + F  I + ++V +F 
Sbjct: 31  EHMDSMILSKLPRINGIVLAYDNI----RFLEKSAKVMY----DSPFSFIWVRVDVLVFS 82

Query: 107 PKMGGCSKHFGDIFLVEGEHV 45
           PK G C +  G I LV   H+
Sbjct: 83  PKKGDCLE--GKINLVSPSHI 101


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 185 SYLGKTCSGCSCCRSHREPR*CVLISSRPFGQRAVLKFAAH 307
           ++L K  S  +  R  REP  C+L+ S P   + V+  + H
Sbjct: 464 NFLKKIASARNAAR--REPINCILLDSNPLSLKGVITMSKH 502


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 641 RRNKSTTTSQRWSRGKHTTKASTLHVP 561
           R+N+ST  +QRWS  +  + + T+ +P
Sbjct: 81  RKNESTEGNQRWSERRFGSFSRTITIP 107


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = -1

Query: 267 RDEMRTHQRGSRWLRQHEQPEQVFPRYDA 181
           +   R H++ + W ++HE+P+ +   +++
Sbjct: 567 KQSWRFHKKYTTWFQRHEEPKMITDEFES 595


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 433 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 266
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,999
Number of Sequences: 5004
Number of extensions: 75190
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)