Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30875
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 126 2e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 126 2e-29
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422... 31 0.91
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.8
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.8
12_02_1260 - 27395754-27397499 28 6.4
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345... 28 6.4
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 6.4
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 28 8.5
08_02_0225 + 14469037-14469064,14470004-14470215,14470324-144704... 28 8.5
06_03_0424 - 20648938-20649564,20650588-20650902 28 8.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 8.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 126 bits (304), Expect = 2e-29
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 95.5 bits (227), Expect = 4e-20
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +3
Query: 51 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 230
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 231 IENPADV 251
IENP D+
Sbjct: 72 IENPQDI 78
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDEQQ 684
P N K SIG ++WLL ++ P +WDV+VDLF +PE +++E++
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILP-GHKWDVMVDLFFYR-DPEEAKEQEEEE 221
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 126 bits (304), Expect = 2e-29
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 98.7 bits (235), Expect = 4e-21
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +3
Query: 18 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 197
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 198 KLVLAARAVVAIENPADV 251
KL LAAR +VAIENP D+
Sbjct: 61 KLQLAARVIVAIENPQDI 78
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDEQQGQ 690
P N K +SIG ++WLL ++ P +WDV+VDLF E K + +E Q
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILP-GHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>11_01_0534 +
4227838-4228001,4229034-4229151,4229593-4229752,
4229901-4230027,4230899-4231037,4231119-4231301,
4231395-4231464,4231550-4231662
Length = 357
Score = 31.1 bits (67), Expect = 0.91
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -2
Query: 686 PCCSSLFTFLSGFTVRRNKSTTTSQRWSRGKHTTKASTLHVPNNHHIKPIEWEDLVLHGK 507
PC +S+ T L + K TT Q + K+T KAS+L V + +W +V H +
Sbjct: 109 PCANSICTALHSGSSPNKKCTTQQQCDYQIKYTDKASSLAVDMTN-----KWGKMVQHQQ 163
Query: 506 Q---CPQILVGSLCCTKQS 459
Q C ++ L C+ S
Sbjct: 164 QQTACLGLVGDQLACSHSS 182
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 118 TFSAPRWVVAASILVTSSSLRASTSNP 38
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 259 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 351
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>12_02_1260 - 27395754-27397499
Length = 581
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 611 RWSRGKHTTKASTLHVPNNHHIKP 540
RW R K+TT A + +P+ HH +P
Sbjct: 548 RWYRFKNTTIADHVELPDYHHHQP 571
>06_03_1480 -
30432718-30432996,30433151-30434123,30434251-30434585,
30434929-30435075,30435498-30435569
Length = 601
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 635 NKSTTTSQRWSRG-KHTTKASTLHVPNNHHIKPIEWEDLVLHGKQCPQILVGSLCCTKQS 459
NK + W G HT STL + + I + + H ++ P + V + C KQS
Sbjct: 111 NKVRASYNIWRPGFHHTNTDSTLRLMKDQIIMAKVYATIA-HSQKQPDLYVLLMTCIKQS 169
Query: 458 QE 453
QE
Sbjct: 170 QE 171
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 125 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 232
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 194 GKTCSGCSCCRSHREP-R*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 370
G+ SGC CR R ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 371 AFREPRLLIVLD 406
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>08_02_0225 +
14469037-14469064,14470004-14470215,14470324-14470433,
14470498-14470765,14470878-14471087,14471162-14471230,
14473346-14473591,14473672-14473740,14473808-14473871,
14474468-14474583
Length = 463
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 651 VHG*KKQINHNIPALVTGK-AHHESLNTSRAQQPPHQTNRVGR 526
VHG KK + N P G+ + NTSR + PP Q N VG+
Sbjct: 323 VHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQ-NGVGK 364
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 225 VAIENPADVFSSHHGPSVSVLY*SLP 302
V++ P+ + SSHH P +S L+ LP
Sbjct: 71 VSLVTPSSISSSHHTPPLSALHIMLP 96
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 161 WYPCDQLASYLGKTCSGCSCCRSHREP 241
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,801,554
Number of Sequences: 37544
Number of extensions: 550430
Number of successful extensions: 1471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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