Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30875
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 158 4e-39
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.2
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 3.7
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.9
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.9
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 158 bits (384), Expect = 4e-39
Identities = 73/87 (83%), Positives = 80/87 (91%)
Frame = +2
Query: 248 CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 427
CV IS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP DHQP
Sbjct: 75 CV-ISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQP 133
Query: 428 ITEASYVNIPVIALCNTDSPLRFVDIA 508
+TEASYVNIPVIA CNTDSPLR VD+A
Sbjct: 134 VTEASYVNIPVIAFCNTDSPLRHVDVA 160
Score = 115 bits (276), Expect = 4e-26
Identities = 51/74 (68%), Positives = 62/74 (83%)
Frame = +3
Query: 30 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 209
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 210 AARAVVAIENPADV 251
AAR +V IENPADV
Sbjct: 61 AARIIVTIENPADV 74
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDE---- 678
PCN K HSIGLM+WLL V R W+++ DL+ +PE K ++
Sbjct: 162 PCNNKGIHSIGLMFWLLAR-EVLRMRGSISRALPWEIMPDLYFYR-DPEEAEKEEQAALA 219
Query: 679 -QQGQGNKG 702
QQ + N G
Sbjct: 220 RQQEEANAG 228
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 325 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 504
C H+ C SSCI S+ DCI C+ PS F C+ +C T++C +
Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918
Query: 505 CFP-CNTKSS 531
C P C + SS
Sbjct: 919 CHPTCASCSS 928
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 401 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 496
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 475 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 311
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 647 TVRRNKSTTTSQRWSRGKHTTKA 579
++RRNKS TT QR+ RG H +A
Sbjct: 1075 SLRRNKSATTIQRYYRGFHLRQA 1097
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 382 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 507
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 288 TAR*PKGRDEMRTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVCRHRS 133
T+R R E H+R RQHE+ R+++S H +H RH++
Sbjct: 51 TSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRSRHKT 101
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 475 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 317
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 475 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 317
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +1
Query: 241 PLMC----SHLITALRSACCTEVCRAHRCYAYCGAFHTRCFY*PDSSCIP*TSSLDCIGP 408
PL+C + + +L +CC +CRA CYA SC P L C+
Sbjct: 1198 PLLCLAVPCYALLSLAMSCCPLLCRAVPCYALLSL---------AMSCCP----LLCLAV 1244
Query: 409 CTRPSTHY*SFI--CQHSCDCFVQHRLPTKIC 498
+ PS+ + C++ C + H L +C
Sbjct: 1245 QSGPSSGIFGAVCFCRYECMVVLGHNLYVAVC 1276
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 288 TAR*PKGRDEMRTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVCRH 139
T+R + R E R H+R +HE R++ S H +H RH
Sbjct: 21 TSRHERSRHETRQHERSRHKTSRHESSRHKTSRHERS-RHKTSRHETSRH 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,098,482
Number of Sequences: 59808
Number of extensions: 625980
Number of successful extensions: 1884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1877
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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