Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30875
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 580 PQHFTCPTTTTSNQ*SGKTWCCMG 509
           P+   CP    ++  + KT+CC G
Sbjct: 438 PEEILCPHFNVTDGETTKTFCCKG 461


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 699 LVPLALLFIPFHFSFR 652
           ++P+ LLF+ F  SFR
Sbjct: 230 VIPIMLLFLAFFVSFR 245


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 586  RKPQHFTCPTTTTSNQ*SG 530
            RKP+HF       SNQ  G
Sbjct: 1618 RKPEHFVASYALISNQCEG 1636


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 697 CSLGLVVHPFSLFFQ 653
           C +GLVV PFS  ++
Sbjct: 92  CLVGLVVMPFSAIYE 106


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 398 VLDPAQDHQPITEASYVNIPVIALCNTDSP 487
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 622 QHPSAGHGESTPRKPQHFT 566
           +HP  G GE T  +  H+T
Sbjct: 127 EHPVTGCGERTEGRCLHYT 145


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 622 QHPSAGHGESTPRKPQHFT 566
           +HP  G GE T  +  H+T
Sbjct: 132 EHPVTGCGERTEGRCLHYT 150


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 622 QHPSAGHGESTPRKPQHFT 566
           +HP  G GE T  +  H+T
Sbjct: 132 EHPVTGCGERTEGRCLHYT 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,512
Number of Sequences: 438
Number of extensions: 5228
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)