Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30875
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   128   3e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   123   1e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   123   1e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    34   0.11 
At2g22340.1 68415.m02651 hypothetical protein                          33   0.25 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.8  
At1g51250.1 68414.m05764 expressed protein similar to hypothetic...    28   5.3  
At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,...    27   9.3  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    27   9.3  
At1g51240.1 68414.m05763 hypothetical protein similar to hypothe...    27   9.3  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/89 (65%), Positives = 71/89 (79%)
 Frame = +2

Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
           P+  ++ S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
           HQPI E +  NIP+IA C+TDSP+RFVDI
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 39/67 (58%), Positives = 49/67 (73%)
 Frame = +3

Query: 51  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 230
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 231 IENPADV 251
           IENP D+
Sbjct: 72  IENPQDI 78



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +1

Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDEQQG 687
           P N K  HSIG ++WLL    V          Q+WDV+VDLF      E K + +++ G
Sbjct: 166 PANNKGKHSIGCLFWLLAR-MVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAG 223


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  123 bits (297), Expect = 1e-28
 Identities = 56/89 (62%), Positives = 68/89 (76%)
 Frame = +2

Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
           P+  ++ S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
           HQPI E +  NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 37/63 (58%), Positives = 49/63 (77%)
 Frame = +3

Query: 63  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 242
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 243 ADV 251
            D+
Sbjct: 77  KDI 79



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVDLFLLTVNPERKVKRDEQ 681
           P N K  HSIG ++WLL    ++         Q+WDV+VDLF      E K + DE+
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAA-QKWDVMVDLFFYREPEEAKQEGDEE 222


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  123 bits (297), Expect = 1e-28
 Identities = 56/89 (62%), Positives = 68/89 (76%)
 Frame = +2

Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
           P+  ++ S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
           HQPI E +  NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 37/63 (58%), Positives = 49/63 (77%)
 Frame = +3

Query: 63  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 242
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 243 ADV 251
            D+
Sbjct: 77  KDI 79



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 511 PCNTKSSHSIGLMWWLLGT*SVEAFVVCFPRDQRWDVVVD 630
           P N K  HSIG ++WLL    ++         Q+WDV+V+
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAA-QKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 383 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIASHATPS 526
           P  ++V D  +    I EAS + IPV+A+ + + PL F +  ++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 101 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 220
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 338 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 439
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At1g51250.1 68414.m05764 expressed protein similar to hypothetical
           protein GB:AAD30637
          Length = 139

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 477 QTPH*DLWTLLPMQHQVFPLYWFDVVV 557
           Q PH + W  L + H   P YWFD+ V
Sbjct: 73  QLPHGEKWYCL-ISHGTRPKYWFDIEV 98


>At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,
           putative similar to Swiss-Prot:P36664 acid phosphatase
           surE (EC 3.1.3.2) (Stationary-phase survival protein
           surE) [Escherichia coli O157:H7]; contains Pfam domain
           PF01975: Survival protein SurE
          Length = 315

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 451 HSCDCFVQHRLPTKICGHCFPCNTKSSHSIGLMWW 555
           H   CF+   LPT I  H     T+   S+G M W
Sbjct: 180 HPMQCFLNIDLPTDIANHKGYKLTRQGKSMGKMGW 214


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = -2

Query: 290 VQHADRRAVMR*EHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHL 126
           ++H D ++V++  H S  L+  + TSS ++    T +V+H  TI ++  DI  HL
Sbjct: 349 IKHLDHKSVLK--HPSMQLNILEVTSSLSE----TAKVEHSATIVSAISDIMRHL 397


>At1g51240.1 68414.m05763 hypothetical protein similar to
           hypothetical protein GB:AAD30637
          Length = 127

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 477 QTPH*DLWTLLPMQHQVFPLYWFDVVV 557
           Q PH + W  L + H   P YW+D+ V
Sbjct: 61  QLPHGERWYCL-LSHGTRPKYWYDIEV 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,276
Number of Sequences: 28952
Number of extensions: 420836
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)