Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30873
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 173 2e-44
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 173 2e-44
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 88 1e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 64 3e-11
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.74
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.98
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 6.9
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.1
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 9.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 173 bits (422), Expect = 2e-44
Identities = 88/168 (52%), Positives = 109/168 (64%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
V+P+DV AA+ +IK++RTIQFVDWCPTG + P P + + N
Sbjct: 327 VIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTT 386
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+AW S +KF+ Y+KRAFVHW GEGM E F + +DL
Sbjct: 387 SIAEAW-SRLDHKFD-LMYSKRAFVHWYV-GEGM--EEGEFSEAREDL 429
Score = 159 bits (387), Expect = 3e-40
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITA
Sbjct: 185 VVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITA 244
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRF G+LNVDL EFQTNLVPYPRI
Sbjct: 245 SLRFAGSLNVDLNEFQTNLVPYPRI 269
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 173 bits (422), Expect = 2e-44
Identities = 91/169 (53%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEAT-WPRFNVXXXXXXXX 602
V+P+DV AA+ TIK KRTIQFVDWCPTG + + PP E + + +
Sbjct: 323 VIPRDVQAAVTTIKAKRTIQFVDWCPTGFK-IGICDRPPQHIEGSEIAKVDRAVCMLSNT 381
Query: 603 XXXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+AW S +KF+ Y+KRAFVHW GEGM E F + +DL
Sbjct: 382 TSIAEAW-SRLDHKFD-LMYSKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 155 bits (377), Expect = 5e-39
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRF+G+LNVDL EFQTNLVPYPRI
Sbjct: 241 SLRFEGSLNVDLAEFQTNLVPYPRI 265
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 88.2 bits (209), Expect = 1e-18
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
S RF G LN DL + N+VP+PR+
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRL 263
Score = 76.6 bits (180), Expect = 4e-15
Identities = 33/86 (38%), Positives = 52/86 (60%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCP 503
V K+V+ I +++TK + FV+W P
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYFVEWIP 346
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S+ T
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241
Query: 181 SLRFDGALNVDLTEFQTNLVPYPR 252
+LR+ G +N DL +L+P PR
Sbjct: 242 TLRYPGYMNNDLVSIIASLIPSPR 265
Score = 42.3 bits (95), Expect = 7e-05
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCML 413
P HF L +Y P + E + +V ++ P NQMV +P + +++ +
Sbjct: 264 PRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDI 323
Query: 414 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPW 545
+G+ P DV+ ++ I+ +R F+ W P S V+ + P+
Sbjct: 324 IQGEADPADVHKSLLRIRERRYASFIPWGP-ASIQVALSKKSPY 366
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.026
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -1
Query: 243 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 82
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 238 VPYPRITSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 363
VP P + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.7 bits (61), Expect = 0.98
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = +1
Query: 241 PYPRITSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 420
PYP SH S + S+ R + + H S PT+ +AT + S AV
Sbjct: 251 PYPLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIP 310
Query: 421 VTSYPRM*TRPSLPSKPSVLSNSSTG 498
T+ P + P S P + S +++G
Sbjct: 311 PTTAPAV-VSPPASSFPLMSSAATSG 335
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 330 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 455
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 458 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 315
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 163 VSSITASLRFDGALNVDLTEFQTNLVP--YPRITSHWSRTR-QSSLPRRPTMNSFPSP 327
V +T + DGA ++T +P PR SR ++L PT+NS PSP
Sbjct: 19 VIDLTEDIEDDGADVSEVTLLDLTRIPEFQPRRRIRTSRNHLDANLSNVPTINSIPSP 76
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 274 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 447
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 448 RPSLPSKPSVLSNSST 495
+ S P +N +T
Sbjct: 460 STPVTSTPLTTTNCTT 475
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 280 QSSLPRRPTMNSFPSPRSQTHASSPPTR 363
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 435 WVRRHHGTAYSKPCTCHDGG 376
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 711 LPYPHPTLPSARKHAW-RNMKVRTCWFKASPKLSAMAVVLDN 589
+P +P+ +R+H + R ++ R F SPK S++ +V+DN
Sbjct: 555 IPIHYPSSRVSRRHRFHRALRSR---FSRSPKKSSVKIVVDN 593
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 237 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 64
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 757 GKPRSLTGFRKKFSLPPIPSPDVTQCTKARL 665
G P L K SLPP+PS +Q + L
Sbjct: 333 GIPTDLLSLVSKISLPPVPSNSSSQRSNVSL 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,631
Number of Sequences: 5004
Number of extensions: 70639
Number of successful extensions: 279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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