Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30873
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 182 2e-46
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 182 2e-46
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 182 2e-46
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 180 1e-45
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 180 1e-45
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 169 2e-42
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 169 2e-42
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 95 3e-20
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 95 3e-20
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 95 5e-20
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 95 5e-20
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 93 1e-19
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 93 2e-19
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 93 2e-19
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 93 2e-19
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 93 2e-19
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 69 3e-12
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 69 3e-12
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.28
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 3.4
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 3.4
At1g68080.1 68414.m07777 expressed protein 28 6.0
At1g51355.1 68414.m05776 expressed protein 28 7.9
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 182 bits (443), Expect = 2e-46
Identities = 95/168 (56%), Positives = 110/168 (65%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVNAA+ TIKTKRTIQFVDWCPTG + P P +
Sbjct: 323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ YAKRAFVHW GEGM E F + +DL
Sbjct: 383 SVAEVF-SRIDHKFD-LMYAKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 154 bits (374), Expect = 5e-38
Identities = 67/85 (78%), Positives = 81/85 (95%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTA 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGALNVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRI 265
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 182 bits (443), Expect = 2e-46
Identities = 95/168 (56%), Positives = 110/168 (65%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVNAA+ TIKTKRTIQFVDWCPTG + P P +
Sbjct: 323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ YAKRAFVHW GEGM E F + +DL
Sbjct: 383 SVAEVF-SRIDHKFD-LMYAKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 154 bits (373), Expect = 7e-38
Identities = 67/85 (78%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTA 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGALNVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRI 265
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 182 bits (443), Expect = 2e-46
Identities = 95/168 (56%), Positives = 110/168 (65%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVNAA+ TIKTKRTIQFVDWCPTG + P P +
Sbjct: 323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ YAKRAFVHW GEGM E F + +DL
Sbjct: 383 SVAEVF-SRIDHKFD-LMYAKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 154 bits (373), Expect = 7e-38
Identities = 67/85 (78%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTA 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGALNVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRI 265
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 180 bits (437), Expect = 1e-45
Identities = 94/168 (55%), Positives = 108/168 (64%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVNAA+ TIKTKRT+QFVDWCPTG + P P +
Sbjct: 323 VVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNT 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ YAKRAFVHW GEGM E F + +DL
Sbjct: 383 AVAEVF-SRIDHKFD-LMYAKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 156 bits (378), Expect = 2e-38
Identities = 69/85 (81%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGA+NVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRI 265
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 180 bits (437), Expect = 1e-45
Identities = 94/168 (55%), Positives = 108/168 (64%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVNAA+ TIKTKRT+QFVDWCPTG + P P +
Sbjct: 323 VVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNT 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ YAKRAFVHW GEGM E F + +DL
Sbjct: 383 AVAEVF-SRIDHKFD-LMYAKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 156 bits (378), Expect = 2e-38
Identities = 69/85 (81%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGA+NVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRI 265
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 169 bits (411), Expect = 2e-42
Identities = 88/168 (52%), Positives = 104/168 (61%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVIS+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXX 605
VVPKDVN A+A IK KRTIQFVDWCPTG + P P +
Sbjct: 323 VVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNT 382
Query: 606 XXXKAWGSP*TNKFEPSCYAKRAFVHWVTSGEGMGGRENFFRKPVKDL 749
+ + S +KF+ Y+KRAFVHW GEGM E F + +DL
Sbjct: 383 AVAEVF-SRIDHKFD-LMYSKRAFVHWYV-GEGM--EEGEFSEAREDL 425
Score = 151 bits (365), Expect = 7e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D ++DNEAIYDICRR+LDIERPTY+NLNRLI Q +SS+T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTT 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGA+NVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRI 265
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 169 bits (410), Expect = 2e-42
Identities = 73/88 (82%), Positives = 80/88 (90%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGD
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGD 322
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTG 509
VVPKDVNAA+ TIKTKRTIQFVDWCPTG
Sbjct: 323 VVPKDVNAAVGTIKTKRTIQFVDWCPTG 350
Score = 154 bits (374), Expect = 5e-38
Identities = 67/85 (78%), Positives = 81/85 (95%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTA 240
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRFDGALNVD+TEFQTNLVPYPRI
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRI 265
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +2
Query: 509 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 616
FK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 351 FKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 180 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 239
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRF G LN DL + NL+P+PR+
Sbjct: 240 SLRFPGQLNSDLRKLAVNLIPFPRL 264
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/99 (33%), Positives = 53/99 (53%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 262 PRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 321
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPP 542
+ K+V+ I ++ K + FV+W P +S S PP
Sbjct: 322 MSTKEVDEQILNVQNKNSSYFVEWIPNNVKS-SVCDIPP 359
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 180 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 239
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
SLRF G LN DL + NL+P+PR+
Sbjct: 240 SLRFPGQLNSDLRKLAVNLIPFPRL 264
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/99 (34%), Positives = 53/99 (53%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 262 PRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQ 321
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPP 542
+ K+V+ I I+ K + FV+W P +S S PP
Sbjct: 322 MSTKEVDEQILNIQNKNSSYFVEWIPNNVKS-SVCDIPP 359
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/91 (34%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + I+ K + FV+W P +S
Sbjct: 321 LSTKEVDEQMMNIQNKNSSYFVEWIPNNVKS 351
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.9 bits (166), Expect = 9e-13
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMMNVQNKNSSYFVEWIPNNVKS 351
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKS 351
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 181 SLRFDGALNVDLTEFQTNLVPYPRI 255
LRF G LN DL + NL+P+PR+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRL 263
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 425
P HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320
Query: 426 VVPKDVNAAIATIKTKRTIQFVDWCPTGSRS 518
+ K+V+ + ++ K + FV+W P +S
Sbjct: 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKS 351
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VV+PYNS+LT ++DC ++DN A+ I L + PT+ N L+ ++S+ T
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTT 241
Query: 181 SLRFDGALNVDLTEFQTNLVPYPR 252
+LR+ G +N DL +L+P PR
Sbjct: 242 TLRYPGYMNNDLVGLLASLIPTPR 265
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACC 407
P HF + Y P+ +A + +V ++ + N MV R+ KY++
Sbjct: 264 PRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISIL 323
Query: 408 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPW 545
+ +G+V P V+ ++ I+ ++ + F+DW P S V+ + P+
Sbjct: 324 NIIQGEVDPTQVHESLQRIRERKLVNFIDWGP-ASIQVALSKKSPY 368
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +1
Query: 1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 180
VV+PYNS+LT ++DC ++DN A+ I L + PT+ N L+ ++S+ T
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTT 241
Query: 181 SLRFDGALNVDLTEFQTNLVPYPR 252
+LR+ G +N DL +L+P PR
Sbjct: 242 TLRYPGYMNNDLVGLLASLIPTPR 265
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Frame = +3
Query: 246 PPYHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACC 407
P HF + Y P+ +A + +V ++ + N MV R+ KY++
Sbjct: 264 PRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISIL 323
Query: 408 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGSRSVSTTSHPPWCPEA 557
+ +G+V P V+ ++ I+ ++ + F++W P S V+ + P+ A
Sbjct: 324 NIIQGEVDPTQVHESLQRIRERKLVNFIEWGP-ASIQVALSKKSPYVQTA 372
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 452 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 345
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 142 NRLIGQIVSSITASLRFDGALNVDLT-EFQTNLVPYPRITSHWSRTRQSSLPRRPTMNSF 318
N+L G + + T SLR N L + L +P +S T LP +P S
Sbjct: 192 NKLSGPVPNLDTVSLRRLNLSNNHLNGSIPSALGGFPS-SSFSGNTLLCGLPLQPCATSS 250
Query: 319 PSPRSQTHASSPP 357
P P H S+PP
Sbjct: 251 PPPSLTPHISTPP 263
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 168 LDHCFFEIRRRSECGPHRVPD*LGALPPYHFPLVTYAPVISAEKA 302
L C RRR GP RV + LPPY P +T A V + A
Sbjct: 97 LQRCIIARRRRDRVGPVRVEN---TLPPYPPPPMTSAAVTTTTLA 138
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 491 DELDSTLGFDGSDGRVHILGYDVTTVQ 411
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g51355.1 68414.m05776 expressed protein
Length = 116
Score = 27.9 bits (59), Expect = 7.9
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 241 PYPRITSHWSRTRQSSLPRRP-TMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCT 417
P R T+ + P P ++NS + S T S+ PT +PV A + CCT
Sbjct: 8 PLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSST--STSPTSTATPSPVSAESG---CCT 62
Query: 418 VVTS-YPRM*TRPSLPSKPSVLSN 486
S P M T P P K V N
Sbjct: 63 PEKSRIPEMLTCPPAPKKQKVAQN 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,192
Number of Sequences: 28952
Number of extensions: 404339
Number of successful extensions: 1338
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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