Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30871
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.47 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          25   0.63 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           25   0.63 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    22   5.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.7  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 699 FDNSWEEERAELGTYCELLFRSASSPFLRIFV 604
           FD  +EE RA LG Y    +   +  FL  F+
Sbjct: 409 FDRHYEENRAPLGLYFHAAWLKNNPEFLDAFL 440


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 275 NRFGSSGAVRRERFHQEWKAPEA*AGSKAVPPRTHPWVPWN 153
           ++F +   ++   F QE    E    ++A+PP T+P   WN
Sbjct: 13  SQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWN 53


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 275 NRFGSSGAVRRERFHQEWKAPEA*AGSKAVPPRTHPWVPWN 153
           ++F +   ++   F QE    E    ++A+PP T+P   WN
Sbjct: 4   SQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWN 44


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 659 HTANYCSEALLLPS 618
           HTANY S+ L+LPS
Sbjct: 169 HTANYDSKYLVLPS 182


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 698 STTAGKRSALSLEHTANYCSE 636
           ST  GKRS  S    AN C E
Sbjct: 24  STDWGKRSGSSAGSDANNCKE 44


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 189 GPSTDPSLGSLES 151
           GPS DPS+ S E+
Sbjct: 280 GPSQDPSISSTET 292


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 185 GPPSTPLTPR 214
           GPP TPL P+
Sbjct: 59  GPPRTPLQPK 68


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 241 SRRTAPEEPNRLRTLLSKKP 300
           +R T P EP R   LL + P
Sbjct: 350 TRTTHPNEPGRFAKLLLRLP 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,590
Number of Sequences: 336
Number of extensions: 2729
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)