Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30871
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0694 - 27311910-27312056,27314277-27314420,27315085-273151... 31 1.2
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 30 1.6
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794... 30 1.6
01_01_0262 + 2130487-2130574,2130674-2131744,2131847-2131991,213... 29 2.9
10_08_0492 + 18292208-18292248,18292874-18293365,18294139-182943... 29 3.8
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 5.0
04_01_0138 - 1558877-1558981,1559030-1559737 29 5.0
03_05_0550 - 25455889-25456114,25456204-25456406 29 5.0
01_05_0166 + 18844468-18845184,18847394-18847690 29 5.0
12_02_0640 - 21447470-21448309 28 6.6
12_02_0635 - 21430245-21431156 28 6.6
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 6.6
04_01_0195 + 2279186-2279908,2279957-2280061 28 6.6
07_03_1629 - 28246440-28247339 28 8.7
06_02_0105 - 11893666-11895483,11895661-11896422 28 8.7
06_01_1203 + 10393555-10393939,10396144-10396352 28 8.7
05_06_0128 - 25850148-25850260,25850460-25850703 28 8.7
>04_04_0694 -
27311910-27312056,27314277-27314420,27315085-27315108,
27315570-27315713,27316372-27316423,27316534-27316599,
27316724-27316955,27316970-27317081
Length = 306
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 302 LGFLLNSVR-NRFGSSGAVRRERFHQEWKAP--EA*AGSKAVPPRTHPWV 162
+GFL+++V +RFG +G + ER +Q W P EA G+ + W+
Sbjct: 28 IGFLVSNVSLDRFGGAGFLELERGYQPWVIPKSEARGGAGHAVKKVKRWL 77
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVS----PATNPFSINDFEFEPWASSLLGEMSNEDSKEPK 169
PL S SSM + P + P P + +P A+SL + PK
Sbjct: 180 PLPSSSAGASSSMPGTEEAGPSTLPPPPPPPPLPASSEPVDPSAASL-PPLPPPPPPPPK 238
Query: 170 DGSVEGPPSTPLTPRAPSTPG 232
++ G P PL P P PG
Sbjct: 239 PANIAGAPGLPLPPPPPPPPG 259
>04_03_0083 +
10878487-10878714,10878781-10879223,10879267-10879423,
10879573-10880433
Length = 562
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 519 SHSAGQHSMQQLHHNNSDVLLKILNDKIRRRYGGREKKRFGTVIRS 656
+H G H+++++ D+L+K L+D+ R + E+ GT+ RS
Sbjct: 193 THHRGMHTIKEMLAAKLDLLMKKLDDQERAKPYAEEQVTRGTIARS 238
>01_01_0262 +
2130487-2130574,2130674-2131744,2131847-2131991,
2132873-2132944,2133330-2133398,2134173-2134241,
2134322-2134403
Length = 531
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 705 LLFDNSWEEERAELGTYCELLFRSASSP 622
L F + W E + G Y +L+F SA+SP
Sbjct: 136 LSFRSPWPEPASRYGAYSDLIFPSATSP 163
>10_08_0492 +
18292208-18292248,18292874-18293365,18294139-18294319,
18294388-18294442,18294473-18294592,18295335-18295465,
18295691-18295891
Length = 406
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 17 VTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGS 178
+ +G SS C SR PV+ AT S+ D A SLL E+ +++ + D +
Sbjct: 59 IDDGSSSTCPSRIDKPVADATLSTSLQDV-----ALSLLDEIFDDNPRTAPDNT 107
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 167 KDGSVEGPPSTPLTPRAPS 223
K + E PP+TP TPR+PS
Sbjct: 2633 KKNAPEPPPTTPTTPRSPS 2651
>04_01_0138 - 1558877-1558981,1559030-1559737
Length = 270
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 74 ATNPFSINDFEF-EPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVV 250
A P S + F F +P SL + D+ +PKDG V+ P P+ AH V
Sbjct: 29 AKPPVSFS-FNFSDPSTYSLDDLLFEGDAAKPKDGLVDLTSGRSCYPYCPAGRMSYAHPV 87
Query: 251 QLLKSQIGYER 283
QL G E+
Sbjct: 88 QLYDDTTGGEK 98
>03_05_0550 - 25455889-25456114,25456204-25456406
Length = 142
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 PPSTPLTPRAPSTPGESAHVVQLLKSQIGYE 280
PP P APST G VQL+ + GYE
Sbjct: 22 PPPAPPPETAPSTVGGGGDGVQLVMPEDGYE 52
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 128 LLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGE 235
++ E S++ K+PK + +GPP+ L R PGE
Sbjct: 209 IVDENSSKQEKKPKSVNFDGPPTRVLLLRNMVGPGE 244
>12_02_0640 - 21447470-21448309
Length = 279
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 152 DSKEPKDGSVEGPPSTPLTPRAPSTPG 232
+S P G PP P +P+ P+TPG
Sbjct: 218 ESPSPPRGRPRTPPPPPGSPKKPATPG 244
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 152 DSKEPKDGSVEGPPSTPLTPRAPSTPG 232
+S P G PP P +P+ P+TPG
Sbjct: 215 ESPSPPRGRPRTPPPPPGSPKKPATPG 241
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPG 232
P GS PS P P +P+TPG
Sbjct: 60 PTSGSGPAAPSMPANPASPATPG 82
>04_01_0195 + 2279186-2279908,2279957-2280061
Length = 275
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 74 ATNPFSINDFEF-EPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVV 250
A P S + F F +P SL + D+ +PKDG V+ P P+ AH V
Sbjct: 34 AKPPVSFS-FNFSDPSTYSLDDLLFEGDAAKPKDGLVDLNAGRSCYPYCPAGRMSYAHPV 92
Query: 251 QLLKSQIGYER 283
QL G E+
Sbjct: 93 QLYDDTTGGEK 103
>07_03_1629 - 28246440-28247339
Length = 299
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 155 SKEPKDGSVEGPPSTPLTPRAPS 223
S+ PK S PPS+P++ R PS
Sbjct: 4 SEPPKPASQPSPPSSPMSERPPS 26
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +2
Query: 8 MPSVTNG-ESSMCE--SRYRSPVSPATNPFSINDFEF----EPWASSLLGEMSNEDSKEP 166
+P + G +S+M E + ++P+S P +++ +P A S+ + ++++S EP
Sbjct: 58 LPEILVGNKSNMQEISTEQKAPISVCATPSEVDNSGLVSASDPHAFSVTSQ-NDDESTEP 116
Query: 167 KDGSVEGPPSTPLTPRAPSTPGESAHVVQL 256
S PPS T T VVQL
Sbjct: 117 SSDSTTIPPSEKNTHSTSQTSDRLKAVVQL 146
>06_01_1203 + 10393555-10393939,10396144-10396352
Length = 197
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 222 EGARGVSGVEGGPSTDPSLGSLESSFDISPRREEAQGSNSKSFIENGFVAGLTGDRYRD 46
EG R + + GPS P L + +S + E G+ ++ +G VAG G R+
Sbjct: 8 EGVRRLQRGKKGPSASPPLALVAASTTTTANLGELGGAMAEELRGDGSVAGRLGRASRE 66
>05_06_0128 - 25850148-25850260,25850460-25850703
Length = 118
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 337 DCSSWSLLRKTN*ASCSTAFV 275
DCSSW+ L KTN +S T V
Sbjct: 81 DCSSWAFLAKTNRSSWKTRSV 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,624
Number of Sequences: 37544
Number of extensions: 341815
Number of successful extensions: 1332
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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