Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30871
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37) 29 3.9
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 29 3.9
SB_3524| Best HMM Match : ETS_PEA3_N (HMM E-Value=5.8) 29 3.9
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 5.1
SB_33252| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 28 6.7
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 6.7
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 28 8.9
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4) 28 8.9
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 28 8.9
SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0) 28 8.9
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPGESAHVVQLL 259
P S PSTP TP PSTP H+V L+
Sbjct: 548 PSMPSTPSTPSTPSTPSTPSTPSTLVHLVHLV 579
Score = 33.1 bits (72), Expect = 0.24
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNP----FSINDFEFEPWASSL---------LGEM 142
P PS S+ C +P +P+TN S +F FE W+ L ++
Sbjct: 318 PSTPSTPKTPSTPC-----TPNTPSTNRKKIFISALEFAFETWSMERVHFLKIDIDLVDI 372
Query: 143 SNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TPR PSTP
Sbjct: 373 ITSTPSTPCTPSTPSTPSTPSTPRTPSTP 401
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPG 232
P S PSTP TP AP TPG
Sbjct: 491 PSTSSTPSTPSTPSTPSAPGTPG 513
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPGESAHVVQLL 259
P S+ PSTP TP PSTP + +V L+
Sbjct: 545 PSTPSMPSTPSTPSTPSTPSTPSTPSTLVHLV 576
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP+TPR PSTP
Sbjct: 404 PCTPSTPSTPSTPITPRTPSTP 425
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S G PSTP TP PSTP
Sbjct: 518 PSTPSAPGTPSTPSTPSTPSTP 539
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/76 (27%), Positives = 28/76 (36%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSV 181
P PS + S+ C S S + P + + S+ + P S
Sbjct: 66 PSAPSTPSTPSTPCTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPSTPST 125
Query: 182 EGPPSTPLTPRAPSTP 229
PSTP TP PSTP
Sbjct: 126 PSAPSTPSTPSTPSTP 141
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSV 181
P PS + S+ C +P +P+T S+ P S S + P S
Sbjct: 261 PSTPSTPSTPSTPCTPN--TPSTPSTP--SMPSTPSTPSTPSTPSTPSTPSA--PSTPST 314
Query: 182 EGPPSTPLTPRAPSTP 229
PSTP TP+ PSTP
Sbjct: 315 PSTPSTPSTPKTPSTP 330
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +2
Query: 2 PLMPSVTNGESS-MCESRYRSPVSPAT-NPFSINDFEFEPWASSLLGEMSNEDSKE-PKD 172
P PS+T+ S+ S +P +P+T + S P S S + P
Sbjct: 446 PSTPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPST 505
Query: 173 GSVEGPPSTPLTPRAPSTPG 232
S G P TP TP PS PG
Sbjct: 506 PSAPGTPGTPSTPSTPSAPG 525
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSV 181
P PS + S+ C +P +P+T S+ P S S + P S
Sbjct: 811 PSTPSTPSTPSTPCTPN--TPSTPSTP--SMPSTPSTPSTPSTPSTPSTPSA--PSTPST 864
Query: 182 EGPPSTPLTPRAPSTP 229
PSTP TP+ PSTP
Sbjct: 865 PSTPSTPSTPKTPSTP 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPGESA 241
P S PSTP TP PSTP S+
Sbjct: 470 PSTPSTPSTPSTPSTPSTPSTPSTSS 495
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TPR PSTP
Sbjct: 15 PCTPSTPSTPSTPSTPRTPSTP 36
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP+TP PSTP
Sbjct: 150 PSTPSTPSTPSTPITPGTPSTP 171
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S G PSTP TP PSTP
Sbjct: 425 PCTHSTPGTPSTPSTPSTPSTP 446
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPGESAHVVQLL 259
P S PSTP TP PST H+V L+
Sbjct: 551 PSTPSTPSTPSTPSTPSTPSTLVHLVHLVHLV 582
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP+TP PSTP
Sbjct: 700 PSTPSTPSTPSTPITPGTPSTP 721
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP+TP PSTP
Sbjct: 39 PCTPSTPSTPSTPITPSTPSTP 60
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S+ PSTP TP PSTP
Sbjct: 252 PSTPSMPSTPSTPSTPSTPSTP 273
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P G PSTP TP AP TP
Sbjct: 506 PSAPGTPGTPSTPSTPSAPGTP 527
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 643 PSTPSTRSTPSTPSTPSTPSTP 664
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S+ PSTP TP PSTP
Sbjct: 691 PSTPSMPNTPSTPSTPSTPSTP 712
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S+ PSTP TP PSTP
Sbjct: 802 PSTPSMPSTPSTPSTPSTPSTP 823
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 18 PSTPSTPSTPSTPRTPSTPSTP 39
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 129 PSTPSTPSTPSTPSTPSTPSTP 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 132 PSTPSTPSTPSTPSTPSTPSTP 153
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 135 PSTPSTPSTPSTPSTPSTPSTP 156
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 138 PSTPSTPSTPSTPSTPSTPSTP 159
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 141 PSTPSTPSTPSTPSTPSTPSTP 162
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTPG 232
P S PSTP TP P TPG
Sbjct: 144 PSTPSTPSTPSTPSTPSTPITPG 166
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P G PSTP TP AP TP
Sbjct: 159 PSTPITPGTPSTPSTPSAPGTP 180
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 122 SSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
S+L ++ P S PSTP TP PSTP
Sbjct: 235 STLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTP 270
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 383 PSTPSTPSTPSTPRTPSTPSTP 404
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKE-PKDGS 178
P PS + S+ S S ++ P S P A G S + P S
Sbjct: 470 PSTPSTPSTPSTPSTPSTPSTPSTSSTP-STPSTPSTPSAPGTPGTPSTPSTPSAPGTPS 528
Query: 179 VEGPPSTPLTPRAPSTP 229
PSTP TP PSTP
Sbjct: 529 TPSTPSTPSTPSTPSTP 545
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 527 PSTPSTPSTPSTPSTPSTPSTP 548
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 646 PSTRSTPSTPSTPSTPSTPSTP 667
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 652 PSTPSTPSTPSTPSTPSTPSTP 673
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P G PSTP TP AP TP
Sbjct: 709 PSTPITPGTPSTPSTPSAPGTP 730
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 122 SSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
S+L ++ P S PSTP TP PSTP
Sbjct: 785 STLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTP 820
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 126 PSAPSTPSTPSTPSTPSTPSTP 147
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSV 181
P+ PS + S+ RS S + P + + S M N S P S
Sbjct: 180 PITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPS-----MPNTPST-PSTPST 233
Query: 182 EGPPSTPLTPRAPSTP 229
STP+TP PSTP
Sbjct: 234 PSTLSTPITPSTPSTP 249
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 533 PSTPSTPSTPSTPSTPSMPSTP 554
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S PSTP TP PSTP
Sbjct: 542 PSTPSTPSMPSTPSTPSTPSTP 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 164 PKDGSVEGPPSTPLTPRAPSTP 229
P S+ PSTP TP PSTP
Sbjct: 670 PSTPSLTHTPSTPSTPSTPSTP 691
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = +2
Query: 2 PLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSV 181
P+ PS + S+ RS S + P + + S M N S P S
Sbjct: 730 PITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPS-----MPNTPST-PSTPST 783
Query: 182 EGPPSTPLTPRAPSTP 229
STP+TP PSTP
Sbjct: 784 PSTLSTPITPSTPSTP 799
>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 213 RGVSGVEGGPSTDPSLGSLESSFDISPRREE 121
RG S E G S D S +S+F +SP R+E
Sbjct: 50 RGRSDKEAGTSVDSSKRGYKSTFSVSPLRDE 80
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 698 STTAGKRSALSLEHTANYCSEALLLPSSVSSSDFIV 591
+T+ K +ALS H A SEALL + +S+D +V
Sbjct: 142 ATSNAKENALSATHGARALSEALLFEITFASADQVV 177
>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
Length = 912
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 191 PSTPLTPRAPSTPGES 238
P TPLTP AP TPG S
Sbjct: 631 PMTPLTPMAPMTPGLS 646
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 237 LSPGVEGARGVSGVEGGPSTDPSLGS 160
L+ GV+G RG G +G P D S GS
Sbjct: 9 LNLGVQGPRGEQGPQGAPGRDGSSGS 34
>SB_3524| Best HMM Match : ETS_PEA3_N (HMM E-Value=5.8)
Length = 357
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 522 HSAGQHSMQQLHHNNSDVLLKILNDKIRRRYGGREKKRFGTVIRSMFQAQRAPLPS 689
H H +H N D + D RRR R ++R+G V R + + PS
Sbjct: 287 HEGPTHIRTSVHRNVGDAAEQDYKDHHRRRSHNRPRRRYGWVGRKVLREDFTKDPS 342
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 698 STTAGKRSALSLEHTANYCSEALLLPSSVSSSDFIV 591
+T+ K +ALS H A SEALL + +S+D +V
Sbjct: 1324 ATSNAKENALSATHGARALSEALLFEITFASADQVV 1359
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 5 LMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVE 184
L+ + T + SR RS +SPA+ + P +S ++ + + S
Sbjct: 161 LLEAFTAAAGTPAGSR-RSSISPASPALRSSLGSLAP--TSRTSTPTSRSTPRSRSRSRA 217
Query: 185 GPPSTPLTPRAPSTP 229
PSTP TP PSTP
Sbjct: 218 RTPSTPSTPSTPSTP 232
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 543 MQQLHHNNSDVLLKILNDKIRRRYGGREKKRFGTVIRSMFQAQRAPLPSCCRTANGP 713
+QQL + V+ ++ D++ + + + + I S PLP+C R A P
Sbjct: 422 IQQLRFDEYQVIDEVFADRVHKEFVAVGEVSNASAILSKISQNPLPLPNCSRLARVP 478
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 380 VASSSSCFNKSFRIRLFELEFASEDE 303
VASSSS F K+ ++F ++FA D+
Sbjct: 178 VASSSSVFQKAVHFKVFVIDFALHDD 203
>SB_33252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 137 EMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESA 241
E E++KE + SVE P TPL P P SA
Sbjct: 78 EEEEENTKEEERQSVEEPLGTPLAMIPPKRPSMSA 112
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 231 PGVEGARGVSGVEGGPSTDPSLG 163
PG G RG+ GV+G P D S G
Sbjct: 244 PGERGDRGILGVQGEPGKDGSPG 266
>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 20 TNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEP-KDGSVEG 187
+N SS C S +P++P NPFS P + E E ++P +GS G
Sbjct: 435 SNQSSSHCNSSQLAPMTPPRNPFSPEMLTSTPNIVTSAHETEVEGHQQPICEGSFAG 491
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Frame = +2
Query: 29 ESSMCESR--YRSPVSPATN----PFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGP 190
+S+ C SR R P SP++ P D F P + +S PK+ S P
Sbjct: 1032 DSNPCSSRSPIRMPASPSSRGGSAPLPSFDAMFSPTKQKSFPPAPDSNSTSPKEKSKRSP 1091
Query: 191 PSTPLTPRAPSTPGESAHVVQLL 259
+ PR + ++LL
Sbjct: 1092 VTKASKPRGKKVANKKQGALRLL 1114
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 SINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLT-PRAPSTPGESAHVVQL 256
+I+D + ++ + +M NE S S S T PR +TP +H+ QL
Sbjct: 102 AIDDIQSRAFSKTKTSKMKNEGSSTISSKSTTESSSAGSTIPRVKTTPSSKSHLSQL 158
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 549 QLHHNN-SDVLLKILNDKIRRRYGGREKKRFGTVIRSMFQAQRAP 680
++HH ++ ++ ND ++ R+G REK R I ++ + + P
Sbjct: 2999 RIHHEKPANDYVQSRNDHVQSRFGAREKSRIRRGIEAILRGRTKP 3043
>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = -1
Query: 231 PGVEGARGVSGVEG-----GPSTDPSLGSLESS 148
PGV G RG+ G EG GP DP ++E +
Sbjct: 75 PGVPGPRGMQGEEGPAGNKGPQGDPGPAAMEGN 107
>SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4)
Length = 268
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 14 SVTNGESSMCESRYRSPVSPAT-NPFSINDF-EFEPWASSLLGEMSNEDSKEPKDGS 178
S+ NG SR P+SP T S+ + E++ W S S+EDS +DGS
Sbjct: 138 SLCNGFKLAIRSRRSKPISPTTRKSHSMTNLNEYKDWTSD-----SSEDSFRIRDGS 189
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 92 INDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQLLKSQI 271
I +++ AS+ G M ED + + PL+P AP ES +V ++
Sbjct: 1062 IMSVDYDSDASANGGHMRREDPQNEESPPDIAKDDKPLSPEAPIAEAESILLVAEVEPGA 1121
Query: 272 GYERC 286
+E C
Sbjct: 1122 KFETC 1126
>SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)
Length = 816
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 699 FDNSWEEERAELGTYCELLFRSASSPFLR 613
F+N +E +A+L TY + L + SPF+R
Sbjct: 466 FNNIGKELKADLQTYYQTLIDTRDSPFIR 494
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,070
Number of Sequences: 59808
Number of extensions: 374549
Number of successful extensions: 1729
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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