Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30871
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 36 0.039
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 32 0.48
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 32 0.48
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 0.84
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 0.84
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 31 1.1
U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical pr... 30 1.9
L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 3.4
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 29 4.5
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 29 4.5
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 4.5
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 4.5
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 4.5
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 4.5
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 29 4.5
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.9
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 28 5.9
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 28 5.9
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 28 5.9
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 7.9
U21318-2|AAC46668.1| 285|Caenorhabditis elegans Collagen protei... 28 7.9
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 86 FSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQLLKS 265
F ND P S G+M++ ++ + S G PSTP TP + T G +A + S
Sbjct: 333 FGGNDLSGVPGPSGGYGQMNSSNTPNQSERSTPGQPSTPGTPGSHGTVGSNAPLSHQKPS 392
Query: 266 Q 268
Q
Sbjct: 393 Q 393
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 86 FSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQLLKS 265
F ND P S G+M++ ++ + S G PSTP TP + T G +A + S
Sbjct: 333 FGGNDLSGVPGPSGGYGQMNSSNTPNQSERSTPGQPSTPGTPGSHGTVGSNAPLSHQKPS 392
Query: 266 Q 268
Q
Sbjct: 393 Q 393
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 137 EMSNEDSKEPKDGSVEGPPSTPLTPRAPST 226
E+S E+SK+ KD E +TP TPRA T
Sbjct: 308 ELSAEESKKKKDMEAEVSSTTPTTPRARGT 337
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 137 EMSNEDSKEPKDGSVEGPPSTPLTPRAPST 226
E+S E+SK+ KD E +TP TPRA T
Sbjct: 308 ELSAEESKKKKDMEAEVSSTTPTTPRARGT 337
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +2
Query: 41 CESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAP 220
C+ + P P P D EP + L G+ + PK GPP P P AP
Sbjct: 145 CKPCPQGPPGPPGPPGPPGD-SGEPGSPGLPGQDAAPGEPGPK-----GPPGPPGAPGAP 198
Query: 221 STPGE 235
TPGE
Sbjct: 199 GTPGE 203
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +2
Query: 41 CESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAP 220
C+ + P P P D EP + L G+ + PK GPP P P AP
Sbjct: 145 CKPCPQGPPGPPGPPGPPGD-SGEPGSPGLPGQDAAPGEPGPK-----GPPGPPGAPGAP 198
Query: 221 STPGE 235
TPGE
Sbjct: 199 GTPGE 203
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 35 SMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKE 163
S+ +Y PV+ + P+ E E W + LLG + ++ E
Sbjct: 382 SLMSHKYGKPVATKSKPYVFGTMENEKWKTGLLGVFTEDEYSE 424
>U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical
protein F26F4.5 protein.
Length = 465
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 140 MSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQLLK 262
+ SK+PK+ PPST TP ST ++ H+++ L+
Sbjct: 154 IGRSSSKQPKEIVAASPPSTSTTPTPSST--DNHHIIEELE 192
>L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical
protein F42H10.5 protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 20 TNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPST 199
+N SS+ S +T S+ + EP +S+ L EM ++ + S PP+T
Sbjct: 150 SNTSSSVSSGSGIGSGSGSTMDLSMKKPKKEP-SSAKLNEMLFNGLRQATNNSNGSPPTT 208
Query: 200 PLTPRAPSTP 229
P P+ P+ P
Sbjct: 209 PHAPQLPNIP 218
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical protein
B0393.5 protein.
Length = 1106
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 71 PATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPP 193
P T S N F + W S +GE + S+ PK +V+ PP
Sbjct: 953 PGTG-LSENPFVMKNWVSDRIGETTTPVSQRPKFVTVQTPP 992
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 231 PGVEGARGVSGVEGGPSTDPSLGS 160
PG GA G SGV+GGP + G+
Sbjct: 234 PGPRGAEGDSGVQGGPGSPGLAGA 257
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 137 EMSNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
E SNE S E D +VE P++P TP
Sbjct: 458 EQSNEQSNESTDDAVESDSDDVPAPQSPPTP 488
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 158 KEPKDGSVEGPPSTPLTPRAPSTP 229
K PK P TP TPR P TP
Sbjct: 467 KTPKTPKTPRTPRTPKTPRTPKTP 490
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 158 KEPKDGSVEGPPSTPLTPRAPSTP 229
K PK P TP TPR P TP
Sbjct: 417 KTPKTPKTPRTPRTPKTPRTPKTP 440
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 158 KEPKDGSVEGPPSTPLTPRAPSTP 229
K PK P TP TPR P TP
Sbjct: 467 KTPKTPKTPRTPRTPKTPRTPKTP 490
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 158 KEPKDGSVEGPPSTPLTPRAPSTP 229
K PK P TP TPR P TP
Sbjct: 467 KTPKTPKTPRTPRTPKTPRTPKTP 490
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 137 EMSNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
E SNE S E D +VE P++P TP
Sbjct: 458 EQSNEQSNESTDDAVESDSDDVPAPQSPPTP 488
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 62 PVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPG 232
P P NPF+ + S L E +K GPP P P P PG
Sbjct: 82 PTKPRVNPFNSVFRQKRQTFSGLPAWCQCEPTKPTCPPGPPGPPGQPGAPGVPGAPG 138
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 62 PVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPG 232
P P NPF+ + S L E +K GPP P P P PG
Sbjct: 66 PTKPRVNPFNSVFRQKRQTFSGLPAWCQCEPTKPTCPPGPPGPPGQPGAPGVPGAPG 122
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 62 PVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPG 232
P P NPF+ + S L E +K GPP P P P PG
Sbjct: 66 PTKPRVNPFNSIFRQKRQTFSGLPAWCQCEPTKPTCPPGPPGPPGQPGAPGTPGAPG 122
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 62 PVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPG 232
P P NPF+ + S L E +K GPP P P P PG
Sbjct: 66 PTKPRVNPFNSVFRQKRQTFSGLPAWCQCEPTKPTCPPGPPGPPGQPGAPGTPGAPG 122
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 62 PVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPG 232
P P NPF+ + S L E +K GPP P P P PG
Sbjct: 78 PTKPRVNPFNSIFRQKRQTFSGLPAWCQCEPTKPTCPPGPPGPPGQPGAPGTPGAPG 134
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
F44E2.4 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 38 MCESR-YRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKE--PKDGSVEGPPSTPLT 208
+C R +++P+ P P + +SS + S+E E P+ + PST T
Sbjct: 977 ICPIRPHQAPIVPINQPARVTPTLETVLSSSTMVSTSSESDSESAPEQETEPTVPSTTET 1036
Query: 209 PRAPSTP 229
+PSTP
Sbjct: 1037 TESPSTP 1043
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 231 PGVEGARGVSGVEGGPSTDPSLG 163
PG +G G G GGP TD + G
Sbjct: 217 PGKDGEAGAPGAPGGPGTDGAPG 239
>U21318-2|AAC46668.1| 285|Caenorhabditis elegans Collagen protein
75 protein.
Length = 285
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 234 SPGVEGARGVSGVEGGPSTDPSLGSL 157
+PG+ G G+SG G P + S+G++
Sbjct: 209 APGIPGEEGLSGPTGQPGSPGSIGAM 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,119
Number of Sequences: 27780
Number of extensions: 273131
Number of successful extensions: 1858
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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