Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30871
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    26   0.42 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.97 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.8  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 114 GSNSKSFIENGFVAGLT 64
           G  S+ F+EN ++AGLT
Sbjct: 277 GPESRGFVENSYLAGLT 293


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 228 GVEGARGVSGVEGGP 184
           GV+G +GV GV+G P
Sbjct: 861 GVQGVQGVQGVQGVP 875



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 228  GVEGARGVSGVEGGPSTDPSLGSLESSFDISPRREEAQGSNSKSFIENGFVAGLT 64
            GV+G +GV GV+G        G L+    +    +  QG N    ++ G   G T
Sbjct: 855  GVQGVQGVQGVQGVQGVQGVPGLLQGVQQVF--GQGVQGMNVPYGMQRGQSGGQT 907



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 228 GVEGARGVSGVEG 190
           GV+G +GV GV+G
Sbjct: 852 GVQGVQGVQGVQG 864



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 228 GVEGARGVSGVEG 190
           GV+ A+GV GV+G
Sbjct: 846 GVQTAQGVQGVQG 858


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 693 NSWEEERAELGTYCELLFRSASSPFLR 613
           NS     AELG +C ++  +A  P LR
Sbjct: 328 NSLRLSDAELGLFCSVVVIAADRPGLR 354


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 122 SSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESA 241
           SSL G       +EP  G +    S+P   ++PS    SA
Sbjct: 603 SSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSA 642


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 111 SNSKSFIENGFVAGLTGDRY 52
           ++ KS  ENG   G+  D+Y
Sbjct: 160 NDEKSLFENGVEIGINFDKY 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,871
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)